Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5029 127 2e-24 seq5075 89.7 4e-13 >seq5029 Length=1900948 Score = 127 bits (140), Expect = 2e-24 Identities = 343/519 (66%), Gaps = 12/519 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || ||||| || | ||| | | || ||||| || ||||||| | ||| Sbjct 1880952 CCGAAGATCGTCAATGGGCCGCAGATCCTCGACAAGTATGTGGGCGAATCGGAGGCCAAT 1880893 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || ||||| ||||||| || || || || || | || || | |||| ||| ||| Sbjct 1880892 GTGCGACGCCTGTTTGCCGAGGCCGAGGAGGAGGAGAAGCGGCTGGGGCCCAACAGTGGA 1880833 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG----G 19604 | ||||| || || | || || | || || ||||| |||||| |||| || | | Sbjct 1880832 CTCCACATCATCATCTTCGACGAGATCGATGCCATCTGCAAGCAACGAGGCTCCGTGGCG 1880773 Query 19605 TGTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || ||| || || ||||| || |||||||| || ||| | ||| | || || || Sbjct 1880772 GGCAACAGTGGGGTCCACGACACCGTCGTCAATCAGCTGCTGACCAAAATCGATGGCGTG 1880713 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||| || || | || || |||||||| ||| | | ||| | || ||| Sbjct 1880712 GATCAGCTGAACAACATCCTGGTAATCGGCATGACCAATCGGCGGGACATGATCGACGAG 1880653 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | ||||||||||| |||| | | || || || | | | ||| | || Sbjct 1880652 GCACTCCTCCGACCCGGTCGCCTGGAGGTCCAAATGGAGATCAGCCTGCCCAACGAGCAG 1880593 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 ||||| || | || | || || | ||| ||| | ||||| | ||| | | Sbjct 1880592 GGACGCGTTCAGATCCTGAATATCC--ACACCAAGCGAATGCGGGACTTCAACAAGATCA 1880535 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 | |||||||| || | | || || ||||| || |||||||||| ||||| || || Sbjct 1880534 ACGACGATGTGGA-CAACAAGGAGATTGCCTCGCTGACCAAAAACTTCAGCGGAGCCGAG 1880476 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 || |||||||| ||| | ||||| || || | ||| ||| Sbjct 1880475 CTGGAGGGATTGGTGCGTGCCGCGCAGTCCAGTGCCATG 1880437 >seq5075 Length=1967217 Score = 89.7 bits (98), Expect = 4e-13 Identities = 255/389 (66%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| ||||| || | ||| | | |||||||| || ||||||| | ||| Sbjct 1515439 CCCAAGATTGTGAATGGCCCACAGATCCTGGACAAATATGTGGGCGAATCGGAGGCCAAT 1515498 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || || ||||| || || || || || || | || || || || | || ||| | Sbjct 1515499 ATCCGGCGATTGTTCGCCGAAGCCGAGGAGGAGGAGAAGCGCTTGGGACCAAACAGTGGT 1515558 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 ||||||| || || | || || | || || || || ||| | ||||| ||| Sbjct 1515559 CTGCACATCATCATCTTCGACGAGATCGATGCCATTTGCAAGGCTCGTGGTTCGGTGGCC 1515618 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || ||| || || ||||| || ||||||||||| ||| | || | ||||| || Sbjct 1515619 GGCAACAGTGGTGTCCACGACACGGTCGTCAATCAACTGCTGGCCAAGATCGACGGCGTG 1515678 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || || | || || || ||||| || || | ||| | || ||| Sbjct 1515679 GAGCAGTTGAACAACATCCTGGTGATAGGAATGACCAACAGGCGGGACATGATCGACGAG 1515738 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| | | || || || || |||| | | || || || | ||| ||| | ||| Sbjct 1515739 GCCCTGCTGCGCCCTGGCCGCCTGGAGGTGCAAATGGAGATCAGCTTGCCCAACGAACAG 1515798 Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811 ||||| || | ||| | ||||| || || Sbjct 1515799 GGACGCGTCCAGATTCTCAACATCCACAC 1515827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429701951145