Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5214 284 1e-71 seq5277 129 5e-25 seq4488 93.3 4e-14 >seq5214 Length=3698012 Score = 284 bits (314), Expect = 1e-71 Identities = 1013/1567 (65%), Gaps = 31/1567 (2%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || |||||||| ||||| || || | || ||||| ||||||| ||| |||||||| Sbjct 3420201 TTATCCACGGTGAACTGAATCGCGTTCGCAGCTGGCTTTGTGCGCAGATAGTACATGCCG 3420260 Query 130466 GTTTTGAGTCCAATTTTGTGTCCA----TAATTGTGGATGCTGCACATTGTTTG--GTAA 130519 || ||||| ||| ||| ||| ||| ||| ||| || ||||| ||| Sbjct 3420261 GTCTTGAGGCCAGCTTT----CCAGGAGTAAAAGTGAATGGACGTCA--GTTTGCCGTAG 3420314 Query 130520 TTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCT 130579 || || | ||||| ||||||| ||| || ||| || || || || || | ||| Sbjct 3420315 TTCGGCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCT 3420374 Query 130580 GCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639 || ||||| | | ||| || || ||||| |||||||||| ||||| | | Sbjct 3420375 GCGGCCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGA 3420434 Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699 | | | ||| ||| | |||| || | ||| || ||| || || | ||| Sbjct 3420435 ACCTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAAATGATCTGGTTC 3420494 Query 130700 CGCATACTTTTATCGTACAATCCAAGCT-GTACAAGATCTTTTACCAAATGATTATTAAT 130758 |||| | || |||| | |||| | ||| || | | |||||||| || | Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAG-TCCCTCAACAAATGATGGTTGAC 3420553 Query 130759 GATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAA 130818 | || || ||||| | ||| ||||| | ||||||||| | ||| | || || || Sbjct 3420554 CACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAA 3420613 Query 130819 GGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG 130878 |||||||||||||| | |||||| || || | ||| ||||||||| ||| || | || Sbjct 3420614 AGATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAG 3420673 Query 130879 AGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGA 130938 || || | | ||||||| | |||| ||||| || | ||||||||| || Sbjct 3420674 GGAGTTCCTGACACCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733 Query 130939 GGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGA 130998 || || || |||| |||||| || | || || || || || || |||| ||| Sbjct 3420734 CGTGGGCTTC---TTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCC 3420790 Query 130999 TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCC 131058 ||| | | ||| ||| |||||||| | ||||| || ||| |||||||| || || Sbjct 3420791 CTCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCC 3420850 Query 131059 GTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGG 131118 ||| |||||||||||| || || | ||| || | |||| | ||| ||||| || Sbjct 3420851 GTAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGG 3420910 Query 131119 AAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATG 131178 ||| ||| | ||| | ||||| |||| |||||| | || | ||||||||| | ||| Sbjct 3420911 GAATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATG 3420970 Query 131179 TTTTAAATTACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTATTTTGTT 131238 | |||||| |||| | | |||||||| ||| ||||||||||| ||||| Sbjct 3420971 CCTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTT 3421030 Query 131239 TAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGT 131298 | ||| | || | | ||||| |||| ||| | ||||||| |||| | Sbjct 3421031 GAGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATACGT---CTT 3421087 Query 131299 TTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTC 131358 ||| | | || || || | || || ||||| || || ||||| | ||||| Sbjct 3421088 CTCGGGCGTGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTC 3421147 Query 131359 ATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATT 131418 || |||||| ||| ||||||| ||||||||| |||| ||| |||||||| | ||| Sbjct 3421148 CGGCGCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATT 3421207 Query 131419 TTGTTGATTGCTTTTAGCATT-CACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTT 131477 || || ||||| || || ||| |||||| ||| |||||| || |||| |||| Sbjct 3421208 CTGCTGGTTGCTCTTCCTGTTGCAC-GAATCCTTGAACAGCATGTACGGATTGCCGGTTT 3421266 Query 131478 CGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTA 131535 | || || | ||||| ||| | | | | | | | ||| | || | | Sbjct 3421267 CCACCTGCGACTCAATGATGGCGAACCACAAGGACTGTGCCTTGAC-CGTCCGGTTCGCA 3421325 Query 131536 TTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC 131595 |||| | ||||| | ||||| | |||| || | | ||| || | || Sbjct 3421326 -CGGCCCTCCTGCTCGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTG 3421384 Query 131596 CAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTT 131655 || ||| |||| | |||||||| |||||||| | ||||| || || || || Sbjct 3421385 CAGGCCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTT 3421444 Query 131656 CATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGT 131715 ||| || | ||| || | ||| | ||||| || ||||| | || ||||| || | Sbjct 3421445 CATGAAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTT 3421504 Query 131716 ACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATA 131775 || | | || || | | | || || || | ||||| |||||||| |||| || Sbjct 3421505 GCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTA 3421564 Query 131776 CACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACCATGTTGTT 131832 | || | || || ||||| ||| || |||| || | ||| ||| ||||| Sbjct 3421565 AATGGCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTT 3421624 Query 131833 GTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCT 131892 | | || | | |||||| ||| || |||| | | ||||| |||| ||| || | Sbjct 3421625 GAAGACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGT 3421684 Query 131893 GCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTA 131951 ||| ||||| | ||| || || || |||||||| ||||| |||| |||| ||||| | Sbjct 3421685 GCCCTTGGCCCGGATGCAATGGACATTCAGTCCAATGCCTCCTGCCG-ATTTCGAGATCA 3421743 Query 131952 GTGCGCA 131958 ||||| Sbjct 3421744 TGGCGCA 3421750 >seq5277 Length=7425378 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| ||||| || | || || ||||| || || |||||||| Sbjct 1194152 TGCCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 1194093 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || | || || || || ||||| ||| ||||||||||||| ||||| || | Sbjct 1194092 ACAAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGG 1194033 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| |||| | | || | || || | || |||| Sbjct 1194032 GAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAA 1193973 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || |||||||| | ||| || ||||| || ||||| ||||||||||| Sbjct 1193972 CCTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| ||||| || || || || || || || || ||||| || Sbjct 1193240 TGCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCG 1193181 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | || || || || ||||| || ||||||||||||| ||||| || | Sbjct 1193180 ACAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGG 1193121 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | | || | || || | | ||||| Sbjct 1193120 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAA 1193061 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||||||||| || ||||| ||||| ||||| Sbjct 1193060 CCTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | ||||| || || || || ||||||||| Sbjct 1193466 CCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193407 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | |||||| || ||| | ||||||||||| ||||| || || Sbjct 1193406 AGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGA 1193347 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || || || |||| | | || | || || | | |||||| Sbjct 1193346 ATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACC 1193287 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||| || || || || || || ||||||||||| Sbjct 1193286 TCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | ||||| || | || || || ||||| || ||||||||| Sbjct 1193696 TGCCACCGCGAAGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGG 1193637 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | || || ||||| || ||||| |||| | ||||| ||||| || | Sbjct 1193636 ATAGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGG 1193577 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| |||| | || | || || | | ||||| Sbjct 1193576 GAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAA 1193517 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || ||||| || | ||| || || | || ||||| |||||||||||| Sbjct 1193516 CCTCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTGCATA 1193467 >seq4488 Length=533506 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| || | |||| ||| | || || || || || || |||||||| Sbjct 135533 TGCCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 135474 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | || || ||||| || |||||| | || |||||||| ||||| || | Sbjct 135473 ACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 135414 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT-GGCTTCA 27197 | | ||||| || || ||||| |||| | || | ||||| | |||| || Sbjct 135413 GAATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCA 135354 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || || | ||||| || || |||||||||||||| ||||| Sbjct 135353 CCTCCAAG-GTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424906283817048