Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq5242 123 8e-23
seq5214 111 5e-19
>seq5242
Length=5320397
Score = 123 bits (136), Expect = 8e-23
Identities = 357/536 (67%), Gaps = 30/536 (6%)
Strand=Plus/Minus
Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396
|| |||||| | |||||| | ||||| ||||||||| || |||| ||| || || ||
Sbjct 3388500 TTCTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCAC---CGCCT- 3388445
Query 443397 TCTAG--CCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACG 443454
| || | | || || | ||| || | | ||||||||||||| | ||| |
Sbjct 3388444 -CAAGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCCGATG 3388386
Query 443455 GTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCC 443514
| |||||| |||||| |||||| ||| ||| | | ||| | ||| |||||||
Sbjct 3388385 GCATCGTCAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGATCACGGAGGCCC 3388326
Query 443515 GCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGT 443574
||| |||||||| ||||| ||| ||||||||| | ||| | ||| | ||||| |
Sbjct 3388325 GCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGCGTGC 3388266
Query 443575 TGATCAAGACACTAAT-TCCGAACGAAGACGAAC-AGCGGTCC-ATCTTCTCATCGT--T 443629
||||| |||||| | |||| | | || || ||||| | || ||| || |
Sbjct 3388265 TGATC--GACACTTACATCCG---GGATCCGCACCAGCGGGAGTACCTGTTCAACGCCAT 3388211
Query 443630 CATGACCACGCCAGGCATCACTGAA----AAGACTCGCTGGGCAAAACAGTGGCTCGAAC 443685
| ||| | ||| | | |||| ||| || |||||| ||| || |
Sbjct 3388210 CGAGACGATGCCGG----CGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATCT--C 3388157
Query 443686 GAGAAAATCT--CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTT 443743
|| || || |||| ||||| | |||| ||||| | || || || | ||
Sbjct 3388156 CTCCAAGTCGGCCAATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTT 3388097
Query 443744 GTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTC 443803
|| ||||||||| || |||||||| |||||| |||| ||||| || || |||| || |
Sbjct 3388096 CTTCAGCGGCAGC-TTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGAC 3388038
Query 443804 TGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCC 443859
||||||| ||||| |||||| || |||||||| ||||| || |||||||||
Sbjct 3388037 TGACCTTCTCCAACGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGACTTCGCC 3387982
>seq5214
Length=3698012
Score = 111 bits (122), Expect = 5e-19
Identities = 212/310 (68%), Gaps = 2/310 (1%)
Strand=Plus/Minus
Query 254979 TACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAAC 255038
|||| ||| || | || |||||||| ||||| || ||||| ||||| || |||||||| |
Sbjct 3421644 TACCCATGCTCAGGGTCTTCAACAATGTGGCACGTTACGTGGATCAGGGTGGCGGCAAGC 3421585
Query 255039 GCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG-GTTTTTA 255097
| || || || ||| |||| ||||||||||| |||||| | ||| || || ||| |
Sbjct 3421584 GGCCCGGTGCCTTCGCCATTTACCTGGAGCCCTGGCACTCGGAC-GTGTTCGAGTTCCTG 3421526
Query 255098 CTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTC 255157
|| | || ||||||| |||||| ||||||||| ||| | ||| ||
Sbjct 3421525 GAACTCAAGAAGAACACCGGCAAGGAGGAGAATCGCGCCCGCGATCTCTTCTACGCCCTC 3421466
Query 255158 TGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGT 255217
||| |||||| || ||| |||||| || ||| | |||| || ||||||
Sbjct 3421465 TGGATACCCGATCTTTTCATGAAACGCGTCGAGGCCAACGGGGACTGGTCGCTGATGTGT 3421406
Query 255218 CCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTG 255277
|| || || ||||| || ||| ||||| || ||||| ||||| ||||| |
Sbjct 3421405 CCGCACAAATGCCCCGGCCTGCACGATGTGTGGGGCGATGAGTTCGAAAAGCTGTACACG 3421346
Query 255278 GAGTACGAGC 255287
| |||||||
Sbjct 3421345 CAATACGAGC 3421336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588225516836905
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |