Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5242 123 8e-23 seq5214 111 5e-19 >seq5242 Length=5320397 Score = 123 bits (136), Expect = 8e-23 Identities = 357/536 (67%), Gaps = 30/536 (6%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| | |||||| | ||||| ||||||||| || |||| ||| || || || Sbjct 3388500 TTCTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCAC---CGCCT- 3388445 Query 443397 TCTAG--CCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACG 443454 | || | | || || | ||| || | | ||||||||||||| | ||| | Sbjct 3388444 -CAAGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCCGATG 3388386 Query 443455 GTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCC 443514 | |||||| |||||| |||||| ||| ||| | | ||| | ||| ||||||| Sbjct 3388385 GCATCGTCAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGATCACGGAGGCCC 3388326 Query 443515 GCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGT 443574 ||| |||||||| ||||| ||| ||||||||| | ||| | ||| | ||||| | Sbjct 3388325 GCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGCGTGC 3388266 Query 443575 TGATCAAGACACTAAT-TCCGAACGAAGACGAAC-AGCGGTCC-ATCTTCTCATCGT--T 443629 ||||| |||||| | |||| | | || || ||||| | || ||| || | Sbjct 3388265 TGATC--GACACTTACATCCG---GGATCCGCACCAGCGGGAGTACCTGTTCAACGCCAT 3388211 Query 443630 CATGACCACGCCAGGCATCACTGAA----AAGACTCGCTGGGCAAAACAGTGGCTCGAAC 443685 | ||| | ||| | | |||| ||| || |||||| ||| || | Sbjct 3388210 CGAGACGATGCCGG----CGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATCT--C 3388157 Query 443686 GAGAAAATCT--CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTT 443743 || || || |||| ||||| | |||| ||||| | || || || | || Sbjct 3388156 CTCCAAGTCGGCCAATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTT 3388097 Query 443744 GTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTC 443803 || ||||||||| || |||||||| |||||| |||| ||||| || || |||| || | Sbjct 3388096 CTTCAGCGGCAGC-TTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGAC 3388038 Query 443804 TGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCC 443859 ||||||| ||||| |||||| || |||||||| ||||| || ||||||||| Sbjct 3388037 TGACCTTCTCCAACGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGACTTCGCC 3387982 >seq5214 Length=3698012 Score = 111 bits (122), Expect = 5e-19 Identities = 212/310 (68%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 254979 TACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAAC 255038 |||| ||| || | || |||||||| ||||| || ||||| ||||| || |||||||| | Sbjct 3421644 TACCCATGCTCAGGGTCTTCAACAATGTGGCACGTTACGTGGATCAGGGTGGCGGCAAGC 3421585 Query 255039 GCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG-GTTTTTA 255097 | || || || ||| |||| ||||||||||| |||||| | ||| || || ||| | Sbjct 3421584 GGCCCGGTGCCTTCGCCATTTACCTGGAGCCCTGGCACTCGGAC-GTGTTCGAGTTCCTG 3421526 Query 255098 CTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTC 255157 || | || ||||||| |||||| ||||||||| ||| | ||| || Sbjct 3421525 GAACTCAAGAAGAACACCGGCAAGGAGGAGAATCGCGCCCGCGATCTCTTCTACGCCCTC 3421466 Query 255158 TGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGT 255217 ||| |||||| || ||| |||||| || ||| | |||| || |||||| Sbjct 3421465 TGGATACCCGATCTTTTCATGAAACGCGTCGAGGCCAACGGGGACTGGTCGCTGATGTGT 3421406 Query 255218 CCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTG 255277 || || || ||||| || ||| ||||| || ||||| ||||| ||||| | Sbjct 3421405 CCGCACAAATGCCCCGGCCTGCACGATGTGTGGGGCGATGAGTTCGAAAAGCTGTACACG 3421346 Query 255278 GAGTACGAGC 255287 | ||||||| Sbjct 3421345 CAATACGAGC 3421336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588225516836905