Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5078 122 1e-22 seq5074 102 1e-16 >seq5078 Length=1488007 Score = 122 bits (134), Expect = 1e-22 Identities = 334/502 (67%), Gaps = 26/502 (5%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || || |||||||| ||||| || | || ||||| | ||| || || ||||| Sbjct 1429846 CGGTCGAAACGACCGGGGCGCAGCAATGCCGGGTCAAGCACATCTGGACGGTTGGTGGCG 1429787 Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 ||||| | | | ||| |||||| ||||| ||||||||||| || | || Sbjct 1429786 GCAATCAGGATCACGCCT---TCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTGG 1429730 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC-ACCAGCACTGCGTTGCTTGCC 11625 || | ||| || || | ||||||||| || | || | ||| |||| || || || Sbjct 1429729 TTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGACC 1429671 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTT---CGCGGGCGATT 11680 || |||||||| ||||||||||||| ||| || || ||||||| | | | | Sbjct 1429670 AACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTACCCTG-----T 1429616 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 || || | || || || | ||||| ||||| || ||||| |||||||||| | Sbjct 1429615 TCGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAA 1429556 Query 11741 GCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 ||||| ||| | ||| || ||||| | |||||| || ||||| ||||| | |||| Sbjct 1429555 CCAGAGA--TGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGG 1429498 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856 | || || || || ||| ||| | || || ||||| ||| || || | || | Sbjct 1429497 TTTTACCAGTGCCCGGCGGCCCCACAAGCAGCACGCCTTTGGGAATTTTACCGCCCAAGC 1429438 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 | ||| ||| | || | || ||||||||||| || || | |||||| |||| || Sbjct 1429437 GCGTAAACTTCTGTGGGTCT--TTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGC 1429380 Query 11917 CGCGTCAATCCCCTCAACATCA 11938 | |||||||| | |||||| Sbjct 1429379 TTCATCAATCCCGGCTACATCA 1429358 >seq5074 Length=4358836 Score = 102 bits (112), Expect = 1e-16 Identities = 182/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 || || || ||| | | || ||||| || ||||| | |||||| || || || |||||| Sbjct 3524639 TCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTGATGTTG 3524580 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 |||| || | ||| | ||||| || |||||||| ||| |||| | | || || || Sbjct 3524579 TTTGCGCCCACAAAGTTCTGGGCCAGATTCACGATGGTCATCTGCAACG-AGACCTCGCC 3524521 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||| ||||| || ||| | || || || | | | | ||| || ||||||| ||| Sbjct 3524520 GTGATGGTAGGCCGACATCTCTGCCACCGAACCGGATAGCTGGGCGACCTTCACCTCACG 3524461 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| |||| | | |||||| | ||||||| || | ||| ||||| || ||||| Sbjct 3524460 CTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGGCCGGGCTTCAGCCCATC 3524401 Query 182045 CGCCATATGGGCAATAGAGCGCT 182067 ||| | || ||||||||||| Sbjct 3524400 GACCAGACTGGGAATAGAGCGCT 3524378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627989380178400