Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5242 165 1e-35 seq5074 113 6e-20 seq4086 109 7e-19 seq4085 109 7e-19 seq5078 93.3 5e-14 >seq5242 Length=5320397 Score = 165 bits (182), Expect = 1e-35 Identities = 295/421 (70%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||||||||| || ||||| ||||||| ||| ||||||| Sbjct 3387695 TACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 3387754 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC--ACTCCAATCTGTTTGAGGAGAC 129845 || | || |||||||| | ||| | || || || || || | || || | | Sbjct 3387755 AAGTTGAACGGGTTCTTGGTGTTGTAGAT--CTTGCCAACGCCCAACTCCACCAGCAAGC 3387812 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-A 129904 |||||| || |||||||||||| |||||| || ||||||| ||||||||||| | Sbjct 3387813 GATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCA 3387872 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || || ||||| || |||| ||| ||||||| ||| || || || | ||| || Sbjct 3387873 CA-GGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCTCG 3387931 Query 129965 TGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACT 130022 ||| ||| ||| | |||| ||| | | || || ||| | |||||| || | Sbjct 3387932 ATGATGCGCTCGCGT-CTGGGTC-GCTGCACCAGGTGCTGGAACATCAGCACGGCGAAGT 3387989 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | |||||||| |||||||| || || || |||||| ||| || ||||| | Sbjct 3387990 CACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCA 3388049 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| |||||||||| ||||||||| | || ||| ||||||||| ||||||| Sbjct 3388050 GACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCA 3388109 Query 130143 C 130143 | Sbjct 3388110 C 3388110 >seq5074 Length=4358836 Score = 113 bits (124), Expect = 6e-20 Identities = 174/246 (71%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||| ||||| ||| | | || || || || ||||| | |||||| || |||||||| || Sbjct 3524640 ATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTGATGTT 3524581 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 ||||| |||| ||| | ||||| || || || || ||| || | | |||| || | Sbjct 3524580 GTTTGCGCCCACAAAGTTCTGGGCCAGATTCACGATGGTCATCTGCAACG-AGACCTCGC 3524522 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242 |||||||||| |||||| | || ||||| | | | | ||| || ||||||| |||| Sbjct 3524521 CGTGATGGTAGGCCGACATCTCTGCCACCGAACCGGATAGCTGGGCGACCTTCACCTCAC 3524462 Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGT 179302 |||| |||| | | |||||| | |||||||||| | || ||||| || || | Sbjct 3524461 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGGCCGGGCTTCAGCCCAT 3524402 Query 179303 CGGCCA 179308 || ||| Sbjct 3524401 CGACCA 3524396 >seq4086 Length=80244 Score = 109 bits (120), Expect = 7e-19 Identities = 256/377 (68%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||||||||| || || || || || || || ||| | | ||| ||||| || Sbjct 8884 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 8825 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAG 14175 ||||| || | || | ||| |||||| |||||||| ||||| ||| || | Sbjct 8824 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 8768 Query 14176 TTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAG-GCATACCACCCGCACTGCGTTG 14232 || |||| || |||||||||||||| || ||| | ||| ||| || || || || Sbjct 8767 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACCGCCGCCCATGCCAGCCCCA---CGGTG 8711 Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGA-TTTTCACGGGCAA 14291 || |||||||||||||| || ||||| | || || ||| | |||| | | Sbjct 8710 GCGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTG 8651 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | || || || || ||||| | ||||| ||||| || ||||| |||||||| | | Sbjct 8650 C-TCGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAG 8592 Query 14352 CGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | ||||| || | || ||| || || || | ||||||||| || || || || || || Sbjct 8591 AGCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGC 8533 Query 14411 GTCTTCCCCGTCCCTGG 14427 ||||| || || || || Sbjct 8532 GTCTTACCTGTGCCCGG 8516 >seq4085 Length=47143 Score = 109 bits (120), Expect = 7e-19 Identities = 256/377 (68%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||||||||| || || || || || || || ||| | | ||| ||||| || Sbjct 25342 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 25283 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAG 14175 ||||| || | || | ||| |||||| |||||||| ||||| ||| || | Sbjct 25282 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 25226 Query 14176 TTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAG-GCATACCACCCGCACTGCGTTG 14232 || |||| || |||||||||||||| || ||| | ||| ||| || || || || Sbjct 25225 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACCGCCGCCCATGCCAGCCCCA---CGGTG 25169 Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGA-TTTTCACGGGCAA 14291 || |||||||||||||| || ||||| | || || ||| | |||| | | Sbjct 25168 GCGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTG 25109 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | || || || || ||||| | ||||| ||||| || ||||| |||||||| | | Sbjct 25108 C-TCGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAG 25050 Query 14352 CGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | ||||| || | || ||| || || || | ||||||||| || || || || || || Sbjct 25049 AGCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGC 24991 Query 14411 GTCTTCCCCGTCCCTGG 14427 ||||| || || || || Sbjct 24990 GTCTTACCTGTGCCCGG 24974 >seq5078 Length=1488007 Score = 93.3 bits (102), Expect = 5e-14 Identities = 250/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||| || || ||||| ||||| || | || |||||| | ||| ||||| || Sbjct 1429850 CTGACGGTCGAAACGACCGGGGCGCAGCAATGCCGGGTCAAGCACATCTGGACGGTTGGT 1429791 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178 || || || | | | ||| | | | ||||| |||||||||||| || | || Sbjct 1429790 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 1429731 Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATAC-CACCCGCACTGCGTTGCTTAC 14237 || | || || ||||| |||||||| || | || | ||| |||| || || || Sbjct 1429730 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 1429672 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATG--GTTGA-TTTTCACGGGCAACTT 14294 | ||||| ||||||||||| ||||| | || || | | ||| |||| || | || Sbjct 1429671 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 1429615 Query 14295 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354 | || || || ||||| | ||||| ||||| || ||||| |||||||| | || Sbjct 1429614 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 1429555 Query 14355 CGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 | | | || | | ||| || || || | |||||| || ||||| ||||| | ||||| Sbjct 1429554 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 1429496 Query 14414 TTCCCCGTCCCTGG 14427 || || || || || Sbjct 1429495 TTACCAGTGCCCGG 1429482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618393231441240