Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq5242 165 1e-35
seq5074 113 6e-20
seq4086 109 7e-19
seq4085 109 7e-19
seq5078 93.3 5e-14
>seq5242
Length=5320397
Score = 165 bits (182), Expect = 1e-35
Identities = 295/421 (70%), Gaps = 10/421 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| || || ||| |||||||||||| || ||||| ||||||| ||| |||||||
Sbjct 3387695 TACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 3387754
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC--ACTCCAATCTGTTTGAGGAGAC 129845
|| | || |||||||| | ||| | || || || || || | || || | |
Sbjct 3387755 AAGTTGAACGGGTTCTTGGTGTTGTAGAT--CTTGCCAACGCCCAACTCCACCAGCAAGC 3387812
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-A 129904
|||||| || |||||||||||| |||||| || ||||||| ||||||||||| |
Sbjct 3387813 GATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCA 3387872
Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964
|| || || ||||| || |||| ||| ||||||| ||| || || || | ||| ||
Sbjct 3387873 CA-GGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCTCG 3387931
Query 129965 TGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACT 130022
||| ||| ||| | |||| ||| | | || || ||| | |||||| || |
Sbjct 3387932 ATGATGCGCTCGCGT-CTGGGTC-GCTGCACCAGGTGCTGGAACATCAGCACGGCGAAGT 3387989
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| | |||||||| |||||||| || || || |||||| ||| || ||||| |
Sbjct 3387990 CACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCA 3388049
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
|||| |||||||||| ||||||||| | || ||| ||||||||| |||||||
Sbjct 3388050 GACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCA 3388109
Query 130143 C 130143
|
Sbjct 3388110 C 3388110
>seq5074
Length=4358836
Score = 113 bits (124), Expect = 6e-20
Identities = 174/246 (71%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123
||| ||||| ||| | | || || || || ||||| | |||||| || |||||||| ||
Sbjct 3524640 ATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTGATGTT 3524581
Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182
||||| |||| ||| | ||||| || || || || ||| || | | |||| || |
Sbjct 3524580 GTTTGCGCCCACAAAGTTCTGGGCCAGATTCACGATGGTCATCTGCAACG-AGACCTCGC 3524522
Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242
|||||||||| |||||| | || ||||| | | | | ||| || ||||||| ||||
Sbjct 3524521 CGTGATGGTAGGCCGACATCTCTGCCACCGAACCGGATAGCTGGGCGACCTTCACCTCAC 3524462
Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGT 179302
|||| |||| | | |||||| | |||||||||| | || ||||| || || |
Sbjct 3524461 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGGCCGGGCTTCAGCCCAT 3524402
Query 179303 CGGCCA 179308
|| |||
Sbjct 3524401 CGACCA 3524396
>seq4086
Length=80244
Score = 109 bits (120), Expect = 7e-19
Identities = 256/377 (68%), Gaps = 16/377 (4%)
Strand=Plus/Minus
Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118
|| ||||||||| || || || || || || || ||| | | ||| ||||| ||
Sbjct 8884 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 8825
Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAG 14175
||||| || | || | ||| |||||| |||||||| ||||| ||| || |
Sbjct 8824 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 8768
Query 14176 TTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAG-GCATACCACCCGCACTGCGTTG 14232
|| |||| || |||||||||||||| || ||| | ||| ||| || || || ||
Sbjct 8767 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACCGCCGCCCATGCCAGCCCCA---CGGTG 8711
Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGA-TTTTCACGGGCAA 14291
|| |||||||||||||| || ||||| | || || ||| | |||| | |
Sbjct 8710 GCGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTG 8651
Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351
| || || || || ||||| | ||||| ||||| || ||||| |||||||| | |
Sbjct 8650 C-TCGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAG 8592
Query 14352 CGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410
| ||||| || | || ||| || || || | ||||||||| || || || || || ||
Sbjct 8591 AGCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGC 8533
Query 14411 GTCTTCCCCGTCCCTGG 14427
||||| || || || ||
Sbjct 8532 GTCTTACCTGTGCCCGG 8516
>seq4085
Length=47143
Score = 109 bits (120), Expect = 7e-19
Identities = 256/377 (68%), Gaps = 16/377 (4%)
Strand=Plus/Minus
Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118
|| ||||||||| || || || || || || || ||| | | ||| ||||| ||
Sbjct 25342 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 25283
Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAG 14175
||||| || | || | ||| |||||| |||||||| ||||| ||| || |
Sbjct 25282 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 25226
Query 14176 TTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAG-GCATACCACCCGCACTGCGTTG 14232
|| |||| || |||||||||||||| || ||| | ||| ||| || || || ||
Sbjct 25225 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACCGCCGCCCATGCCAGCCCCA---CGGTG 25169
Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGA-TTTTCACGGGCAA 14291
|| |||||||||||||| || ||||| | || || ||| | |||| | |
Sbjct 25168 GCGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTG 25109
Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351
| || || || || ||||| | ||||| ||||| || ||||| |||||||| | |
Sbjct 25108 C-TCGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAG 25050
Query 14352 CGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410
| ||||| || | || ||| || || || | ||||||||| || || || || || ||
Sbjct 25049 AGCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGC 24991
Query 14411 GTCTTCCCCGTCCCTGG 14427
||||| || || || ||
Sbjct 24990 GTCTTACCTGTGCCCGG 24974
>seq5078
Length=1488007
Score = 93.3 bits (102), Expect = 5e-14
Identities = 250/374 (67%), Gaps = 10/374 (3%)
Strand=Plus/Minus
Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118
|| ||| || || ||||| ||||| || | || |||||| | ||| ||||| ||
Sbjct 1429850 CTGACGGTCGAAACGACCGGGGCGCAGCAATGCCGGGTCAAGCACATCTGGACGGTTGGT 1429791
Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178
|| || || | | | ||| | | | ||||| |||||||||||| || | ||
Sbjct 1429790 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 1429731
Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATAC-CACCCGCACTGCGTTGCTTAC 14237
|| | || || ||||| |||||||| || | || | ||| |||| || || ||
Sbjct 1429730 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 1429672
Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATG--GTTGA-TTTTCACGGGCAACTT 14294
| ||||| ||||||||||| ||||| | || || | | ||| |||| || | ||
Sbjct 1429671 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 1429615
Query 14295 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354
| || || || ||||| | ||||| ||||| || ||||| |||||||| | ||
Sbjct 1429614 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 1429555
Query 14355 CGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413
| | | || | | ||| || || || | |||||| || ||||| ||||| | |||||
Sbjct 1429554 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 1429496
Query 14414 TTCCCCGTCCCTGG 14427
|| || || || ||
Sbjct 1429495 TTACCAGTGCCCGG 1429482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618393231441240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |