Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5078 114 2e-20 seq4086 104 3e-17 seq4085 104 3e-17 seq5242 102 1e-16 >seq5078 Length=1488007 Score = 114 bits (126), Expect = 2e-20 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| || | ||||| | || || || || |||||||| || Sbjct 1429759 TCAAAACCATCCATCTCAACCAGCATCTGGTTCAGTGTCTGCTCGCGCTCATCATT-GCC 1429701 Query 9671 GGCATACC-ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 | || | ||| |||| || || || ||||||||||| ||||||||||||| || Sbjct 1429700 GCCACCCATACCTGCACCACGATGGCGACCAACGGCATCAATTTCATCAATGAAGATAAT 1429641 Query 9730 GCATG--GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 ||| | | ||||||| | | ||| || | || || ||||| || || ||| Sbjct 1429640 GCAAGGAGCTGATTTT--TTACCCTGTTCGAACATGTCACGCACACGGGATGCACCAACA 1429583 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || || ||||| |||||||||| | | | | || | | ||| || ||||| | ||| Sbjct 1429582 CCTACGAACATTTCCACAAAGTCGGAACCAG-AGATGGTAAAGAACGGTACATTGGCTTC 1429524 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| |||||||| ||||| | || || ||||| || || ||| ||| | || || | Sbjct 1429523 ACCTGCAATGGCGCGGGCCAACAGGGTTTTACCAGTGCCCGGCGGCCCCACAAGCAGCAC 1429464 Query 9907 ACCTCGTGGAATCTTGGCGCC--ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||||| || |||| | | || | ||| || | || ||||||||| Sbjct 1429463 GCCTTTGGGAATTTTACCGCCCAAGCGCGTAA--ACTTCTGTGGGTCTTTCAGAAAATCC 1429406 Query 9965 ACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || ||||| | | ||| |||| || | |||||||| | ||||| Sbjct 1429405 ACGATTTCCTGAAGTTCCCCTTTAGCTTCATCAATCCCGGCTACATC 1429359 >seq4086 Length=80244 Score = 104 bits (114), Expect = 3e-17 Identities = 325/496 (66%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||||||||| || || ||||| || || || || | | ||| || || || Sbjct 8884 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 8825 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || || || | || || ||| | | | ||||| || ||||| || || | || Sbjct 8824 GGCCGCAATCAGAATAACGCCTTCGTTACTTTCAAAGCCGTCCATTTCAACCAGCATCTG 8765 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTT 9697 ||| | || ||||| |||||||| || | || ||| ||||| | || || Sbjct 8764 GTTGAGTGTCTGTTCGCGTTCATCGTTACC--GCCGCCCATGCCAGCCCCACGGTGGCGG 8707 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGAT-TTTCGCGAGCGACTTC 9756 || ||||| ||||| || |||||||||| ||||| ||| | |||| | | || | Sbjct 8706 CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTGCT-C 8648 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 || | || || || || || |||||||| || ||||| |||||||||| | | | Sbjct 8647 GAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGAGCC 8588 Query 9817 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9875 |||| || | || ||| || ||||| | |||||||||||| || || || || || |||| Sbjct 8587 GGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCGTCT 8529 Query 9876 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAA 9935 |||| || || || ||| || || | ||| || || || |||| | Sbjct 8528 TACCTGTGCCCGGAGGACCACACAGCAGAACCCCTTTAGGGATTTTACCGCCCAGACGGG 8469 Query 9936 AGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGT 9995 | || ||| || | ||||| ||||| |||||||| | ||| || ||||| | | Sbjct 8468 TGAATTTCTGCGGGTCTTTAAGGAAATCGACAATTTCCTGCAACTCGCTCTTGGCTTCAT 8409 Query 9996 CAATCCCCTCAACATC 10011 |||| || | ||||| Sbjct 8408 CAATGCCGGCCACATC 8393 >seq4085 Length=47143 Score = 104 bits (114), Expect = 3e-17 Identities = 325/496 (66%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||||||||| || || ||||| || || || || | | ||| || || || Sbjct 25342 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 25283 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || || || | || || ||| | | | ||||| || ||||| || || | || Sbjct 25282 GGCCGCAATCAGAATAACGCCTTCGTTACTTTCAAAGCCGTCCATTTCAACCAGCATCTG 25223 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTT 9697 ||| | || ||||| |||||||| || | || ||| ||||| | || || Sbjct 25222 GTTGAGTGTCTGTTCGCGTTCATCGTTACC--GCCGCCCATGCCAGCCCCACGGTGGCGG 25165 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGAT-TTTCGCGAGCGACTTC 9756 || ||||| ||||| || |||||||||| ||||| ||| | |||| | | || | Sbjct 25164 CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTGCT-C 25106 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 || | || || || || || |||||||| || ||||| |||||||||| | | | Sbjct 25105 GAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGAGCC 25046 Query 9817 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9875 |||| || | || ||| || ||||| | |||||||||||| || || || || || |||| Sbjct 25045 GGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCGTCT 24987 Query 9876 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAA 9935 |||| || || || ||| || || | ||| || || || |||| | Sbjct 24986 TACCTGTGCCCGGAGGACCACACAGCAGAACCCCTTTAGGGATTTTACCGCCCAGACGGG 24927 Query 9936 AGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGT 9995 | || ||| || | ||||| ||||| |||||||| | ||| || ||||| | | Sbjct 24926 TGAATTTCTGCGGGTCTTTAAGGAAATCGACAATTTCCTGCAACTCGCTCTTGGCTTCAT 24867 Query 9996 CAATCCCCTCAACATC 10011 |||| || | ||||| Sbjct 24866 CAATGCCGGCCACATC 24851 >seq5242 Length=5320397 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || |||||||||| || ||||| ||||||||| || |||| | | Sbjct 3388134 GAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 3388075 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| ||||| |||||||| ||||| ||||| || || ||||||||||||||| ||| Sbjct 3388074 ATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTGATC 3388015 Query 94924 TCTCGTGACGAGGGACTCCAC 94944 || || ||||||||| | ||| Sbjct 3388014 TCCCGCGACGAGGGATTGCAC 3387994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583221218463960