Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5277 176 1e-38 seq5214 172 2e-37 seq5051 107 6e-18 seq5078 100 9e-16 >seq5277 Length=7425378 Score = 176 bits (194), Expect = 1e-38 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| | ||||| |||||||| || || || || | Sbjct 1193474 TTTGCATACCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 1193415 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || |||||||| | |||||||| || ||||| ||||| ||||||| Sbjct 1193414 AGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGAT 1193355 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||||||||| || || |||||||||||||| || || || ||||| | |||||| | Sbjct 1193354 CTGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAG 1193295 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||| || || || | || || ||||| || || ||||| || || ||||| Sbjct 1193294 GTTCAACCTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 176 bits (194), Expect = 1e-38 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | ||||| | ||||| |||||||| || || || || | Sbjct 1193930 TTTGCATGCCACCACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 1193871 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || ||||| || |||||||| || ||||| ||||||| Sbjct 1193870 AGTCGGAAAGAGTGCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGAT 1193811 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||||||||| || |||||||| ||||| | |||||| | Sbjct 1193810 CTGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGG 1193751 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||||||||| || | ||||| || |||| || || || || |||||||| Sbjct 1193750 GCTCAACTTCAAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 Score = 158 bits (174), Expect = 4e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||| | ||||| || || ||||| ||||| || ||||| Sbjct 1193014 CATGCCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATC 1192955 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || || |||||||| || || |||||||| || Sbjct 1192954 GGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGG 1192895 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || || || ||||| ||||||| ||| || || || Sbjct 1192894 GGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTC 1192835 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || | |||| ||||| || || | || || ||||| ||||||||| Sbjct 1192834 GACCTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 1192783 >seq5214 Length=3698012 Score = 172 bits (190), Expect = 2e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || | ||| ||||| || ||||| ||||| ||||| Sbjct 3523195 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 3523136 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || ||||| ||||| ||||| |||||||| ||||| Sbjct 3523135 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 3523076 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||||||||| |||||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 3523075 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGAC 3523016 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 3523015 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 >seq5051 Length=1721511 Score = 107 bits (118), Expect = 6e-18 Identities = 243/364 (67%), Gaps = 5/364 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || | |||||| | | || |||||||||| || || || ||||| Sbjct 466885 CCCGAGGAGATCTCCGCCATGGTTCTGGGCAAGATGAAGGAAACCGCCGAGGCCTATTTG 466944 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || | || || | || || |||||||| ||||| ||||| |||||| Sbjct 466945 GGCAAGAAGGTCACCCACGCCGTCGTCACCGTGCCAGCCTACTTTAACGATGCTCAGCGT 467004 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || |||||||| |||||| || | | || | | || ||||| ||| Sbjct 467005 CAGGCCACCAAGGATGCTGGAGTCATTGCCGGTCTGCAGGTGATGCGCATCATTAACGAA 467064 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTAT 349770 |||||||| || || || || ||||| || || || || ||| | || || || | Sbjct 467065 CCCACTGCCGCGGCTATCGCCTATGGTCTGGACAAGAAGGAGGG----CGAGAAGAACGT 467120 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 || | || ||| | || || || || || ||||| ||||| || || | || | || Sbjct 467121 GCTGGTGTTCGATCTGGGCGGCGGCACCTTCGATGTCTCACTGCTGACCATCGATAACGG 467180 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 | | || || || || || |||||||| ||| | || || || || || ||| | Sbjct 467181 AGTGTTCGAGGTGGTGGCCACCAACGGTGATACCCATTTGGGCGGTGAGGACTTCGATCA 467240 Query 349891 TCGT 349894 ||| Sbjct 467241 GCGT 467244 >seq5078 Length=1488007 Score = 100 bits (110), Expect = 9e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||||| |||||| | ||| | ||||||| ||| || | |||||||| || Sbjct 1054379 AAGATGAAGGAAACGGCTGAATCCTATCTGGGTGAAAAAGTTTCTCAGGCTGTTATCACG 1054320 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || ||||| |||||||||||| || || || ||||| || | ||||| Sbjct 1054319 GTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCCACCAAGGATGCAGGTAAGATTGCT 1054260 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | | || || | || || || |||||||| || || || | || || ||||| Sbjct 1054259 GGCCTTGAAGTGCTGCGTATCATCAACGAACCCACAGCGGCTGCTCTGGCTTACGGGCTG 1054200 Query 349742 GATAA 349746 || || Sbjct 1054199 GAAAA 1054195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515149000324487