Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq5277 176 1e-38
seq5214 172 2e-37
seq5051 107 6e-18
seq5078 100 9e-16
>seq5277
Length=7425378
Score = 176 bits (194), Expect = 1e-38
Identities = 180/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | ||||| | ||||| |||||||| || || || || |
Sbjct 1193474 TTTGCATACCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 1193415
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || |||||||| | |||||||| || ||||| ||||| |||||||
Sbjct 1193414 AGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGAT 1193355
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||||||||| || || |||||||||||||| || || || ||||| | |||||| |
Sbjct 1193354 CTGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAG 1193295
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||||| || || || | || || ||||| || || ||||| || || |||||
Sbjct 1193294 GTTCAACCTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240
Score = 176 bits (194), Expect = 1e-38
Identities = 180/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | ||||| | ||||| |||||||| || || || || |
Sbjct 1193930 TTTGCATGCCACCACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 1193871
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || ||||| || |||||||| || ||||| |||||||
Sbjct 1193870 AGTCGGAAAGAGTGCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGAT 1193811
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || ||||||||||| || |||||||| ||||| | |||||| |
Sbjct 1193810 CTGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGG 1193751
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||||||||| || | ||||| || |||| || || || || ||||||||
Sbjct 1193750 GCTCAACTTCAAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696
Score = 158 bits (174), Expect = 4e-33
Identities = 174/232 (75%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| |||||||| | | ||||| | ||||| || || ||||| ||||| || |||||
Sbjct 1193014 CATGCCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATC 1192955
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||||||||| || || || |||||||| || || |||||||| ||
Sbjct 1192954 GGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGG 1192895
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || || || ||||| ||||||| ||| || || ||
Sbjct 1192894 GGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTC 1192835
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|| || | |||| ||||| || || | || || ||||| |||||||||
Sbjct 1192834 GACCTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 1192783
>seq5214
Length=3698012
Score = 172 bits (190), Expect = 2e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || | || | ||| ||||| || ||||| ||||| |||||
Sbjct 3523195 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 3523136
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || |||||||| || || || ||||| ||||| ||||| |||||||| |||||
Sbjct 3523135 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 3523076
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|||||||||||| |||||||| || ||||| ||||| || || | ||| || ||||| ||
Sbjct 3523075 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGAC 3523016
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || || || || || || ||||||||
Sbjct 3523015 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968
>seq5051
Length=1721511
Score = 107 bits (118), Expect = 6e-18
Identities = 243/364 (67%), Gaps = 5/364 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| || || || | |||||| | | || |||||||||| || || || |||||
Sbjct 466885 CCCGAGGAGATCTCCGCCATGGTTCTGGGCAAGATGAAGGAAACCGCCGAGGCCTATTTG 466944
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| | | || || | || || | || || |||||||| ||||| ||||| ||||||
Sbjct 466945 GGCAAGAAGGTCACCCACGCCGTCGTCACCGTGCCAGCCTACTTTAACGATGCTCAGCGT 467004
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || |||||||| |||||| || | | || | | || ||||| |||
Sbjct 467005 CAGGCCACCAAGGATGCTGGAGTCATTGCCGGTCTGCAGGTGATGCGCATCATTAACGAA 467064
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTAT 349770
|||||||| || || || || ||||| || || || || ||| | || || || |
Sbjct 467065 CCCACTGCCGCGGCTATCGCCTATGGTCTGGACAAGAAGGAGGG----CGAGAAGAACGT 467120
Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830
|| | || ||| | || || || || || ||||| ||||| || || | || | ||
Sbjct 467121 GCTGGTGTTCGATCTGGGCGGCGGCACCTTCGATGTCTCACTGCTGACCATCGATAACGG 467180
Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| | || || || || || |||||||| ||| | || || || || || ||| |
Sbjct 467181 AGTGTTCGAGGTGGTGGCCACCAACGGTGATACCCATTTGGGCGGTGAGGACTTCGATCA 467240
Query 349891 TCGT 349894
|||
Sbjct 467241 GCGT 467244
>seq5078
Length=1488007
Score = 100 bits (110), Expect = 9e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621
|| |||||||||| |||||| | ||| | ||||||| ||| || | |||||||| ||
Sbjct 1054379 AAGATGAAGGAAACGGCTGAATCCTATCTGGGTGAAAAAGTTTCTCAGGCTGTTATCACG 1054320
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || || || ||||| |||||||||||| || || || ||||| || | |||||
Sbjct 1054319 GTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCCACCAAGGATGCAGGTAAGATTGCT 1054260
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | | || || | || || || |||||||| || || || | || || |||||
Sbjct 1054259 GGCCTTGAAGTGCTGCGTATCATCAACGAACCCACAGCGGCTGCTCTGGCTTACGGGCTG 1054200
Query 349742 GATAA 349746
|| ||
Sbjct 1054199 GAAAA 1054195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515149000324487
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |