Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5214 295 7e-75 seq5242 143 3e-29 >seq5214 Length=3698012 Score = 295 bits (326), Expect = 7e-75 Identities = 603/886 (68%), Gaps = 14/886 (2%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||||||||||||| || |||||||||| ||| ||| | |||||| |||||| Sbjct 3421119 GATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACGATTTCGGTGCAC 3421178 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 ||||| ||||||||||||| | |||| ||||||||||||| ||| || | ||| Sbjct 3421179 AAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCACGAATCC 3421238 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||| | ||||||||| | ||||| || ||||| || | | | || ||| | | Sbjct 3421239 TTGAACAGCATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGATGGCGAACCACAAG 3421298 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTAC---CGACCCTG-TGCGACGTACGTCCGGTACAA 79292 | | ||| ||| | || || | || |||| ||| |||| | ||||| Sbjct 3421299 GACTGTGCCTTGAC---CGTCCGGTTCGCACGGCCCTCCTGCT-CGTATTGCGTGTACAG 3421354 Query 79293 CTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAG 79352 || | ||| | || || | |||||| ||||||| ||||| | |||||| |||||||| Sbjct 3421355 CTTTTCGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATTTGTGCGGACACATCAG 3421414 Query 79353 GTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT 79412 ||||||| ||| ||| || | |||||| || || || ||||| ||||| Sbjct 3421415 CGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTATCCAGAGGGCGTA 3421474 Query 79413 GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTC 79472 |||||| |||||| || ||||||| | ||| |||| || || || || || Sbjct 3421475 GAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTGAGTTCCAGGAACTC 3421534 Query 79473 CATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCC 79532 | | ||| | |||||| |||||||| || |||||||| | ||| ||||||||||| Sbjct 3421535 GAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACCGGGCCGCTTGCCGCC 3421594 Query 79533 GCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTC 79592 ||||| | ||||| || ||| |||||||| || | ||||||||| || | ||| | Sbjct 3421595 ACCCTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCATGGGTACCAGGCCATT 3421654 Query 79593 GGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATG--TTCGAGCAGTGG 79650 || | ||| ||||| ||| ||| || || | ||||| ||| | || || | Sbjct 3421655 GGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCCTTGGCCCGGATGCAATGGA-CA-TTC 3421712 Query 79651 ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATG 79710 | ||| ||||| || | | | || ||||| ||||||| | | || || | ||||| Sbjct 3421713 AGTCCAATGCCTCCTGCCGATTTCGAGATCATGGCGCACTGTTCCACCGACTTGAAGATG 3421772 Query 79711 CCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTC 79770 ||||||||||||||| || |||| | | ||||||||| ||||| || || || Sbjct 3421773 CCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGTTGCGGCCGATTT 3421832 Query 79771 GTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCG 79830 || | ||| || || || |||| ||||| ||||||||| | || ||| | | Sbjct 3421833 GTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGTGAAGAACCGCTCCGACAGCAGGTTG 3421892 Query 79831 TACGTCTCCTTGACGCGC-GGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAA 79889 || |||||| | | ||| || ||| || || ||||| |||| ||| |||||||| | Sbjct 3421893 TAGGTCTCCACGGC-CGCATCGATGTCCTCTCCATGGATTCCGATCGCCACGCGCATCAG 3421951 Query 79890 GAGGTACTGGGGCGTCTCGCCGACATTCAGGTAGCCCTTCTGCAGG 79935 | || ||| || |||| ||| || || | |||| ||||| Sbjct 3421952 CATGTGCTGCGGACGCTCGGCGATCTTTCCGTTTCTCTTCAGCAGG 3421997 Score = 203 bits (224), Expect = 4e-47 Identities = 552/839 (66%), Gaps = 16/839 (2%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCG-AGACATACGA 19176 ||||| || ||| |||| |||||||| || ||| || | | ||| | |||| ||| | Sbjct 3421948 ATGCGCGTGGCGATCGGAATCCATGGAGAGGACATCGAT-GCGGCCGTGGAGACCTACAA 3421890 Query 19177 CCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236 |||| || || ||||||||| ||||| |||| || ||||| ||| | || || Sbjct 3421889 CCTGCTGTCGGAGCGGTTCTTCACCCACGCCTCGCCAACGCTTTTTGCCGCAGCCACAAA 3421830 Query 19237 CAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCAT 19296 ||||| ||||| || ||||| || | |||| || ||| || |||||||| Sbjct 3421829 TCGGCCGCAACTGTCGTCGTGCTTCCTGCTGACCATGACGGCCGACTCGATCGAGGGCAT 3421770 Query 19297 CTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG---GA- 19352 || | || || | | ||||||| ||||| || | | | || || || || || Sbjct 3421769 CTTCAAGTCGGTGGAACAGTGCGCCATGATCTCGAAATCGGCAGGAGGCATTGGACTGAA 3421710 Query 19353 --TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410 |||| ||| |||||| | | || || ||| || ||||| || | Sbjct 3421709 TGTCCATTGC------ATCCGGGCCAAGGGCACCTCCATCTGCGGCACGAATGGCACCTC 3421656 Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470 | | || | || || |||||| | ||||||||||| ||| | ||||| | ||||| Sbjct 3421655 CAATGGCCTGGTACCCATGCTCAGGGTCTTCAACAATGTGGCACGTTACGTGGATCAGGG 3421596 Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530 |||||||| || || | |||||||| ||||| ||||| |||||| ||||||| | Sbjct 3421595 TGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTACCTGGAGCCCTGGCACTCGGACGTGTT 3421536 Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTT 19590 || ||||| ||||| |||| || | ||||||| ||| ||||| ||||| Sbjct 3421535 CGAGTTCCTGGAACTCAAGAAGAACACCGGCAAGGAGGAGAATCGCGCCCGCGATCTCTT 3421476 Query 19591 CACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCA 19650 | ||| | ||||| || || || |||||| | || ||| ||| || ||| Sbjct 3421475 CTACGCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCGAGGCCAACGGGGACTGGTC 3421416 Query 19651 CCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGA 19710 |||||||| |||||| ||||||| ||||| | ||| || | ||||| | |||| | | Sbjct 3421415 GCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGATGTGTGGGGCGATGAGTTCGAAAA 3421356 Query 19711 GTTGTACCGGACTTACGTAGC-CCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACG 19769 | ||||| | |||| ||| ||||||| || | |||| ||| | | | Sbjct 3421355 GCTGTACACGCAATACG-AGCAGGAGGGCCGTGCGAACCGGACGGTCAAGGCACAGTCCT 3421297 Query 19770 TCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGG 19829 | ||| | | || | | ||||| || ||||||| ||||||||| | ||||| Sbjct 3421296 TGTGGTTCGCCATCATTGAGTCGCAGGTGGAAACCGGCAATCCGTACATGCTGTTCAAGG 3421237 Query 19830 ACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGT 19889 | | ||| ||| || ||| |||| | ||| | ||||||| ||| ||| Sbjct 3421236 ATTCGTGCAACAGGAAGAGCAACCAGCAGAATGTTGGCACCATCAAGTGCAGCAATTTGT 3421177 Query 19890 GTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 | || |||||| | ||| |||| ||||||||||| ||| ||||| || ||||| ||| Sbjct 3421176 GCACCGAAATCGTTGAGTATTCCGCGCCGGACGAGATTGCAGTGTGCAACCTGGCATCC 3421118 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| ||||| || ||||| |||||||||| |||||||| ||||| || ||||| || || Sbjct 3420587 GTAAATGTTAGTTGTGTAGGGCTCGAAAGATTCGTTGTTGCCCATTATTTGGGCAGTGGA 3420646 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGAT 78647 || || ||||||||||| ||||| || || |||| | ||| ||| |||||| Sbjct 3420647 TGCCGTGGGCATGGGTGCAACCAGCAGGGAGTTCCTGACACCGTGCTGCTTGAT 3420700 >seq5242 Length=5320397 Score = 143 bits (158), Expect = 3e-29 Identities = 530/817 (65%), Gaps = 19/817 (2%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| |||| |||||| | || || || ||||||| || ||| || ||| Sbjct 3388503 TCTTTCTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCACCGCCTC 3388444 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||||||||| || |||||| | || ||||||||||| || || ||||| Sbjct 3388443 AAGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCCGATGGC 3388384 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTC--CAAGGATGTCCAGATTGCCGAGGCCC 59790 || || | || || | | || | ||| | |||| || ||||| | ||||||| Sbjct 3388383 ATCGTCAATGAGAACCTGGTG--GAGCGGTTCAGCCAGGAGGTGCAGATCACGGAGGCCC 3388326 Query 59791 GGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 | | ||||||| | ||| ||| || ||| | ||||| |||| |||| | Sbjct 3388325 GCTGCTTCTACGGCTTCCAGATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGCGTG 3388267 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAG 59909 ||||||| | | || ||||||| | || || |||||| ||||| ||| Sbjct 3388266 CTGATCGACACTTACATCCGGGATCCGCACCAGCGGGAGTACCTGTTCAACGCCATCGAG 3388207 Query 59910 ACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG-TCC---TGG 59965 ||| || || || || | || || || ||||| || ||||| ||| | | Sbjct 3388206 ACGATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATCTCCTCCAAGTCG 3388147 Query 59966 AGCATCATTT-GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTG 60024 || |||| | | || |||| || ||||| |||||| || ||||||||| | Sbjct 3388146 GCCA--ATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTTCTTCAGCG 3388089 Query 60025 GCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCT 60084 || ||| | ||||||||||| || ||||| || || |||||||| |||| |||| Sbjct 3388088 GCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCT 3388029 Query 60085 CCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATT 60144 ||||||||||||| ||||| |||||||| | || || || || ||| | | | | Sbjct 3388028 CCAACGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGACTTCGCCGTGCTGATGT-TC 3387970 Query 60145 CA-CACCTATTGGAAAAATGCCCTTCCAAGGATATTCACAAGAT--TGTTCAGTGGGCTT 60201 || ||||| || | | | | || || | |||| | | || | | Sbjct 3387969 CAGCACCTGGTGCAGCGACCCAGACGCGAGCGCATCATCGAGATCATCCGCGATGCGGTG 3387910 Query 60202 GTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACG 60261 | | | ||| |||||| ||||||| || || || || ||||| || ||| || Sbjct 3387909 CTCA--TTGAGCAGGAGTTCCTCACAGACGCCCTGCCTGTGAACCTCATCGGCATGAACT 3387852 Query 60262 CTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAG 60321 || ||| | ||||||||| ||||||| ||||| ||| | ||| |||| || | Sbjct 3387851 GTGACCTGATGTCCCAGTACATTGAGTTTGTGGCGGATCGCTTGCTGGTGGAGTTGGGCG 3387792 Query 60322 AAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381 || || ||| | || ||||| ||| ||| ||||||| |||||| |||| | Sbjct 3387791 TTGGCAAGATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCGCTGGACG 3387732 Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | |||||||| ||||| |||||| ||| || || || Sbjct 3387731 GCAAGACCAATTTCTTCGAGAAGAAGGTGGGCGAGTA 3387695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548487575735760