Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5214 212 7e-50 seq5242 156 5e-33 seq5074 147 2e-30 >seq5214 Length=3698012 Score = 212 bits (234), Expect = 7e-50 Identities = 522/784 (67%), Gaps = 22/784 (3%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTG-AGACGTACG 53252 |||||||| || | || ||||| || || ||| | | ||| ||||| |||| ||| Sbjct 3421948 ATGCGCGTGGCGATCGGAATCCATGGAGAGGACATCGATGCGG--CCGTGGAGACCTACA 3421891 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | || | || ||| || |||||| ||||||| || || ||| | || | Sbjct 3421890 ACCTGCTGTCGGAGCGGTTCTTCACCCACGCCTCGCCAACGCTTTTTGCCGCAGCCACAA 3421831 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| || || ||||| ||||||||| || | |||| || ||||||||||| |||| Sbjct 3421830 ATCGGCCGCAACTGTCGTCGTGCTTCCTGCTGACCATGACGGCCGACTCGATCGAGGGCA 3421771 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG----- 53427 ||| | || || | | |||| ||| ||||| || | | | || || || || Sbjct 3421770 TCTTCAAGTCGGTGGAACAGTGCGCCATGATCTCGAAATCGGCAGGAGGCATTGGACTGA 3421711 Query 53428 -TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | |||| ||| |||| || || ||||| | ||| || ||||| ||| | Sbjct 3421710 ATGTCCATTGCA------TCCGGGCCAAGGGCACCTCCATCTGCGGCACGAATGGCACCT 3421657 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || |||| | || || |||||| | ||||||||||| ||| || ||||| | |||| Sbjct 3421656 CCAATGGCCTGGTACCCATGCTCAGGGTCTTCAACAATGTGGCACGTTACGTGGATCAGG 3421597 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| || ||||| || | |||||||| ||||| ||||| |||||| | ||| | Sbjct 3421596 GTGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTACCTGGAGCCCTGGCACTCGGACGTGT 3421537 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGT 53666 | ||||| || || || ||| || | || |||| ||| ||| || || | Sbjct 3421536 TCGAGTTCCTGGAACTCAAGAAGAACACCGGCAAGGAGGAGAATCGCGCCCGCGATCTCT 3421477 Query 53667 T-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 | ||| || || ||||| || || || |||||| || || ||| ||| ||| ||| Sbjct 3421476 TCTAC-GCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCGAGGCCAACGGGGACTGG 3421418 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAAC 53785 | |||||||| ||| || | ||||||||||| || | ||| | || || ||||| | Sbjct 3421417 TCGCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGATGTGTGGGGCGATGAGTTCGAA 3421358 Query 53786 GAGATGTATCGGACGTAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 || |||| | ||| |||| ||||||| || || ||||||||| | Sbjct 3421357 AAGCTGTACACGCAATACGAGCAG--GAGGGCCGTGCGAACCGGACGGTCAAGGCACAGT 3421300 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 | ||| || ||| | || |||||||| || || | ||||||||| | || Sbjct 3421299 CCTTGTGGTTCGCCATCATTGAGTCGCAGGTGGAAACCGGCAATCCGTACATGCTGTTCA 3421240 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACT 53963 |||||||| |||| ||||||||||||| |||| | ||| |||||| | ||||| | Sbjct 3421239 AGGATTCGTGCAACAGGAAGAGCAACCAGCAGAATGTTGGCACCATCAAGTGCAGCAATT 3421180 Query 53964 TATG 53967 | || Sbjct 3421179 TGTG 3421176 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||||||||| || || || ||||| || || || || || || || |||||||||||| Sbjct 3420679 AACTCCCTGCTGGTTGCACCCATGCCCACGGCATCCACTGCCCAAATAATGGGCAACAAC 3420620 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || | |||||||| ||||| || ||||| ||| Sbjct 3420619 GAATCTTTCGAGCCCTACACAACTAACATTTAC 3420587 >seq5242 Length=5320397 Score = 156 bits (172), Expect = 5e-33 Identities = 534/816 (65%), Gaps = 21/816 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || ||| ||| || || || |||||||| || |||| |||||| ||||||| Sbjct 3387695 TACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 3387754 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATA--GGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||| ||| |||||||| | ||| || | | | ||| |||| ||| | || Sbjct 3387755 AAGTTGAACGGGTTCTTGGTGTTGTAGATCTTGCCAACGCCC--AACTCCACCAGCAAGC 3387812 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 ||||||||||||| | ||||||||| | ||| | | |||||||||||| || | Sbjct 3387813 GATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTT-C 3387871 Query 74641 AC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCT 74697 || ||||| || || |||| ||||| ||| | ||| | ||| | || |||| Sbjct 3387872 ACAGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGA-GCAC-CGCATCGCGGATGATCT 3387929 Query 74698 TGTGAATGTCTTTG-GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAAC 74756 | ||| | | | || | | | | |||||| | | | | |||||| || Sbjct 3387930 CGATGATGCGCTCGCGTCTGGGTCGCTGCAC-CAGGTGCTGGAACATCAGCACGGCGAAG 3387988 Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816 || ||| | || || || | | |||| || || || || | || || ||||| Sbjct 3387989 TCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 3388048 Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876 || || |||||||||| ||| || |||| |||| || |||||||||||||| || Sbjct 3388049 AGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCC 3388108 Query 74877 ACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGTC 74933 || ||||| |||| | ||| | | |||| | | | ||| | ||||| | | Sbjct 3388109 ACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGAGGAGATCCAGGAC 3388168 Query 74934 TGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTT 74993 ||||||| ||||| || || || ||||| || | || ||||| || | ||| ||| Sbjct 3388169 AGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGGTAC 3388228 Query 74994 GCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053 || || | |||||| || | |||| |||| | |||| ||||||| || Sbjct 3388229 TCCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGTGC 3388288 Query 75054 ATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC 75112 | ||| || ||| |||| | ||||||| | || ||||| | ||||| || || Sbjct 3388289 ACGTTCTCCATG-GCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCTGCACCTC 3388347 Query 75113 CT--TTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170 || |||| || | | ||||| |||||||||| || |||||||| || || Sbjct 3388348 CTGGCTGAACCGCTC--CACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAAAGAAG 3388405 Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGG 75230 ||||| || ||| ||||| ||||| ||||| |||| || ||| || ||||| Sbjct 3388406 GCCAGCACGTGCGAGATGAAGTGACGCTCGTCGTCCTTGAGGCGGTGCCAGTCGGTCAGG 3388465 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 ||| | || ||| | |||||| || ||||||||| Sbjct 3388466 TCCTTGGACAGATCCACCTCCTCTACGGTCCAGAAA 3388501 >seq5074 Length=4358836 Score = 147 bits (162), Expect = 2e-30 Identities = 308/453 (68%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| ||||| || ||||||| ||| | |||||| | || || ||| || Sbjct 3524819 CCAGTTCCGATACCCTCGGCGCCGTTGATCAGGACCATCGGTATGATGGGCAAGTACCAC 3524760 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||| | | || || || |||| | ||| | || | | || ||| ||| Sbjct 3524759 AAGGGCTCGATTTTCTGGCCATCGTCCACCTGGTAATCCAGCAGCGGATCGTCCAAGGGA 3524700 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | | | ||| |||| |||| ||| || ||||| ||||| || | |||||| | Sbjct 3524699 TGGTAGATCAGTCGCGTCAGGGGAGACATTATGGTGAAAATGTAACGAGCGCTGGCGCAA 3524640 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || | || || || || ||||| || ||||| || || |||| |||| Sbjct 3524639 TCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTGATGTTG 3524580 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCG-CTTCACC 152174 || |||||||| || ||||| |||| |||||| || || ||||| || | | || || Sbjct 3524579 TTTGCGCCCACAAAGTTCTGGGCCAGATTCACGATGGTCATCTGCA-ACGAGACCTCGCC 3524521 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-CG 152233 ||| || || |||| | ||| || | | || | | ||| || ||||||| || || Sbjct 3524520 GTGATGGTAGGCCGACATCTCTGCCACCGAACCGGATAGCTGGGCGACCTTCACCTCACG 3524461 Query 152234 -TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | ||| |||| |||||| |||| | | ||||||||||||||| || |||| || Sbjct 3524460 CTTGTC--GTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGGCCGGGCTTCAGCCCA 3524403 Query 152293 TCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 || |||| ||||| || |||| | ||||| Sbjct 3524402 TCGACCAGACTGGGAATAGAGCGCTCGTTGTCC 3524370 Score = 145 bits (160), Expect = 8e-30 Identities = 306/454 (67%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||||||||||||||| || || || ||||| | |||||| | || || | ||| || Sbjct 3524819 CCAGTTCCGATACCCTCGGCGCCGTTGATCAGGACCATCGGTATGATGGGCAAGTACCAC 3524760 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| | | | | || |||||| ||| | |||| || || ||| ||| Sbjct 3524759 AAGGGCTCGATTTTCTGGCCATCGTCCACCTGGTAATCCAGCAGCGGATCGTCCAAGGGA 3524700 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | || ||| || | | |||||||||||||||| ||| || | Sbjct 3524699 TGGTAGATCAGTCGCGTCAGGGGAGACATTATGGTGAAAATGTAACGAGCGCTGGCGCAA 3524640 Query 117332 TCCTTGCCACCAG-CAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 |||||||| || | |||| || |||||||| || || | ||||||| || || | ||| Sbjct 3524639 TCCTTGCCGCCCGTCAAG-CGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTGATGTT 3524581 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||| |||||||||||||| || |||| || || || || || | |||| || Sbjct 3524580 GTTTGCGCCCACAAAGTTCTGGGCCAGATTCACGATGGTCATCTGCAACGAGACCTCGCC 3524521 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 || || || |||| | ||| ||||| | || | ||||| || ||||||| || Sbjct 3524520 GTGATGGTAGGCCGACATCTCTGCCACCGAACCGGATAGCTGGGCGACCTTCACCTCACG 3524461 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | |||| |||||| ||||| | |||||||||||||| | |||||||| ||||| Sbjct 3524460 CTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGGCCGGGCTTCAGCCCATC 3524401 Query 117571 CGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604 ||| || || || |||| | ||||| || Sbjct 3524400 GACCAGACTGGGAATAGAGCGCTCGTTGTCCGCA 3524367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547178864554200