Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_028449.1
Length=63569
Score E
Sequences producing significant alignments: (Bits) Value
seq2 152 2e-32
seq30 150 7e-32
seq5077 122 4e-23
>seq2
Length=187580
Score = 152 bits (168), Expect = 2e-32
Identities = 293/428 (68%), Gaps = 13/428 (3%)
Strand=Plus/Minus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| |||||||| ||||||| ||||| | |||||||||||||| || || | | ||||
Sbjct 810 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 751
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | |||||| || || || ||| |||| ||
Sbjct 750 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 691
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| || || ||||| || || || || || ||| || | | || |||||
Sbjct 690 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 631
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | |||||||||||| |||| ||| |||||| |
Sbjct 630 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 571
Query 2821 TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTTT 2880
| || || | | |||| |||||||| || |||||||||||||| |||| |
Sbjct 570 TTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT- 513
Query 2881 CCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATA 2936
|| | | |||||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct 512 --ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGATG 455
Query 2937 AACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGC 2996
|| || ||||| || ||||||||||| ||| || ||||||||||| | ||||| |||
Sbjct 454 AAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAGC 395
Query 2997 TGGTCAGG 3004
|| |||
Sbjct 394 CTGTTAGG 387
>seq30
Length=443100
Score = 150 bits (166), Expect = 7e-32
Identities = 293/429 (68%), Gaps = 14/429 (3%)
Strand=Plus/Plus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| |||||||| ||||||| ||||| | |||||||||||||| || || | | ||||
Sbjct 159934 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 159993
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | |||||| || || || ||| |||| ||
Sbjct 159994 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 160053
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| || || ||||| || || || || || ||| || | | || |||||
Sbjct 160054 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 160113
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | |||||||||||| |||| ||| |||||| |
Sbjct 160114 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 160173
Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879
| || || | | |||| |||||||| || |||||||||||||| |||| |
Sbjct 160174 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 160232
Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935
|| | | |||||||| ||||| ||||| ||| | ||||||||||||||||||
Sbjct 160233 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 160289
Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995
|| || ||||| || ||||||||||| ||| || ||||||||||| | ||||| ||
Sbjct 160290 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 160349
Query 2996 CTGGTCAGG 3004
| || |||
Sbjct 160350 CCTGTTAGG 160358
>seq5077
Length=233700
Score = 122 bits (134), Expect = 4e-23
Identities = 287/424 (68%), Gaps = 22/424 (5%)
Strand=Plus/Plus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| ||||| || ||||||| ||||| | ||||| |||||||| || || | | ||||
Sbjct 102228 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 102287
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | ||||||||| || || ||| |||| |||
Sbjct 102288 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 102347
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| ||||| ||||| || || || ||| || || || | | || |||||
Sbjct 102348 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCCGCTTCAGCC 102407
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | |||||||| ||| |||| ||| || ||| |
Sbjct 102408 AGTCTTTGCGTGTAGCGAATGGACACATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 102467
Query 2821 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 2876
| || || | | | || |||| |||||||| || |||||||| ||||| |||
Sbjct 102468 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 102523
Query 2877 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCAA 2931
| | || || || |||| || ||||| ||||| || | ||| ||||| || ||||
Sbjct 102524 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCAAAGACGTCAA 102579
Query 2932 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 2991
|||| || |||||||| || ||||||||||| ||| || || || ||||| | ||||
Sbjct 102580 TGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAACCC 102639
Query 2992 ACAG 2995
||||
Sbjct 102640 ACAG 102643
Score = 113 bits (124), Expect = 2e-20
Identities = 286/426 (67%), Gaps = 23/426 (5%)
Strand=Plus/Plus
Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645
|| ||||| || ||||||| ||||| | ||||| |||||||| || || | | ||||
Sbjct 56751 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 56810
Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702
||||| | || || | || | || | ||||||||| || || ||| |||| |||
Sbjct 56811 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 56870
Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762
| ||||| ||||| || || || ||| || || || | | || |||||
Sbjct 56871 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCCGCTTCAGCC 56930
Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820
|||| | ||| ||| | |||||||| ||| |||| ||| || ||| |
Sbjct 56931 AGTCTTTGCGTGTAGCGAATGGACACATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 56990
Query 2821 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 2876
| || || | | | || |||| |||||||| || |||||||| ||||| |||
Sbjct 56991 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 57046
Query 2877 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG--GCAAACA-CATC 2929
| | || || || |||| || ||||| ||||| | | ||| ||||| | | ||
Sbjct 57047 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACCAATAACCCGTAGCAAAGAACGTC 57103
Query 2930 AATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCAC 2989
|||||| || |||||||| || ||||||||||| ||| || || || ||||| | ||
Sbjct 57104 AATGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAAC 57163
Query 2990 CCACAG 2995
||||||
Sbjct 57164 CCACAG 57169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 203282548729570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |