Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5074 215 4e-51 seq4674 96.9 3e-15 >seq5074 Length=4358836 Score = 215 bits (238), Expect = 4e-51 Identities = 370/532 (70%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29884 || ||| ||| |||| || ||||| ||| | ||| ||||| ||||||||| ||| Sbjct 1652280 TTGATCAACAGCTTGGGGAATGGTCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCC 1652339 Query 29885 ACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGC 29944 |||| || |||||||||||| | ||| |||| | |||| ||||| || || || | || Sbjct 1652340 ACGTGATTCAGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGA 1652399 Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || || || || || ||||||| ||||| || | |||| ||||||||| ||||| || Sbjct 1652400 CCCGTTACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 1652459 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC-TC-- 30061 || || |||||||| | ||| ||||| ||||| || ||||| || ||| ||| || Sbjct 1652460 CCCAGACCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGTTCGCCG-CGCGTCTG 1652518 Query 30062 ----ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 || || ||||| || | ||| ||||| || || ||||| | ||| Sbjct 1652519 GGAGACATAGAACTGCGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGGAATGTCCGA 1652578 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 || ||||| || ||| ||||||||||||||| || || |||| |||| ||| | Sbjct 1652579 TGGATTCCATGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCCGGATGGTGTCGAT 1652638 Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACT 30236 | | | ||| |||||| | ||| | || | |||||| | | || || | |||| Sbjct 1652639 CACCTGTCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGTGC-CATACT 1652697 Query 30237 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30296 | ||||| || |||| ||||||||| ||||||||||| ||||| ||||| | | | | Sbjct 1652698 CCGCTCCAAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCCAACGGCACGCT 1652757 Query 30297 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30348 | | ||| |||||||| || || |||| | ||| |||||||||| Sbjct 1652758 CCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAT 1652809 >seq4674 Length=694708 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 49128 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 49187 || || || | ||||||||||||||| | ||| || ||||||||| ||||| || || Sbjct 523894 TTGAAGAGCACGACGCCGAGGTTGCCGCGGTAATCCTCGTCCACCACGCCGGCGCCCACA 523953 Query 49188 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 49247 || || || || |||| |||||| || || | ||||| || | ||||||| |||| Sbjct 523954 TCGATGAAGTTCTTCACGGCCAGTCCAGAGCGTGGAGCAACGCGGCCGTAGGAGCCCTCC 524013 Query 49248 GGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGTCGAAGGAGGGGACCAC 49303 || | || ||| |||||| ||||| || | |||| || | || ||| ||||| Sbjct 524014 GGAACCTGCACCTGCAGGTCGGTCTTCACAATGGCCTTGCCCCGGGCGGGAACCAC 524069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406283516091468