Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq5277 105 4e-18
seq4172 98.7 6e-16
seq5214 82.4 5e-11
>seq5277
Length=7425378
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | ||||||||||||||| || |||||| ||| || || ||||| || || ||
Sbjct 1194151 GCCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 1194092
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| || || | || || ||||| ||||| || || || | |||||| || || || ||
Sbjct 1194091 CAAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGG 1194032
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||| ||||| |||| || | || ||| | ||| || || | ||| |
Sbjct 1194031 AATGCCCTCTTTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAA 1193973
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| |||| ||||| ||||||||||| | || ||||| || || ||||||
Sbjct 1193972 CCTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCATG 1193923
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | |||||| | ||||| || || || |||||| || ||||| || || ||
Sbjct 1193923 GCCACCACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1193864
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || || | || || ||||| ||||| ||||| || | |||||| || || || ||
Sbjct 1193863 AAGAGTGCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGG 1193804
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||||||||| ||| ||| | || || | ||| || || | ||| |
Sbjct 1193803 AATGCCCTCCTTGTC-CTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAA 1193745
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| | ||| || || || || ||||| || ||||| || |||||||||
Sbjct 1193744 CTTCAAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCATG 1193695
Score = 96.9 bits (106), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || || || ||||| || ||||| ||||| || || || ||
Sbjct 1194369 AGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGT 1194310
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || | || || |||||||| || |||||||| ||||| || || | |||||||
Sbjct 1194309 CCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCC 1194250
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| ||| | || || | ||| ||||| |||||| |||| ||
Sbjct 1194249 TTGTCCTGGAT-TTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGT 1194191
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || |||| || ||||| || || ||||||
Sbjct 1194190 AATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATG 1194151
Score = 95.1 bits (104), Expect = 8e-15
Identities = 158/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || ||| || || |||||||| ||||| ||||| || ||
Sbjct 1193001 AGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGG 1192942
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| |||||||| || || |||||||| || | ||||| || || || || | ||||||
Sbjct 1192941 CCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCC 1192882
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || || | ||| || || ||| || |||| ||
Sbjct 1192881 TTGTC-CTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGT 1192823
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713
|| || || || || || || |||||||| |||||||| ||||||
Sbjct 1192822 AATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGATT 1192777
Score = 89.7 bits (98), Expect = 3e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | ||||||||||||||| || | ||| |||||| || ||||| ||||| ||
Sbjct 1193239 GCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGA 1193180
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| || || | || || ||||| ||||| ||||| || | |||||| || || || ||
Sbjct 1193179 CAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGG 1193120
Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622
| || |||||||| ||||||
Sbjct 1193119 GATGCCTTCCTTGTCCTGGATCTT 1193096
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || | |||||| | ||||| || || || |||||||| ||||| || || ||
Sbjct 1193695 GCCACCGCGAAGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGA 1193636
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| ||||| | || ||||| || || |||||||| || || ||||| || || || ||
Sbjct 1193635 TAGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGG 1193576
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||||||||| ||| || | || || | ||| || || || |
Sbjct 1193575 AATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAA 1193517
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| |||| || || ||||| |||||||| || ||||| || || |||||
Sbjct 1193516 CCTCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||| | ||||| || || || |||||| || ||||| || || |||
Sbjct 1193466 CCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193407
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| | ||||| || || || || | |||||| || || || ||
Sbjct 1193406 AGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGA 1193347
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| ||| | || ||| | ||| || || || ||
Sbjct 1193346 ATTCCCTCCTTGTC-CTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAAC 1193288
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| || || ||||||||||| | || || || || || ||||||
Sbjct 1193287 CTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCATG 1193239
>seq4172
Length=1033301
Score = 98.7 bits (108), Expect = 6e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||||||| | |||| |||||| || ||||||||||| || | || ||
Sbjct 907205 AGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGT 907264
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 907265 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 907324
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 907325 TTGTCCTGGATCTT 907338
Score = 96.9 bits (106), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||||| | |||| ||||||||| ||||| || || || || || ||
Sbjct 906977 AGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGT 907036
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 907037 CCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 907096
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | || || || ||| || |||| ||
Sbjct 907097 TTGTCCTGGATC-TTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGT 907155
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| || || || || || |||||||||
Sbjct 907156 GATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCATG 907195
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || || || ||||| || ||||||||||| || | || ||
Sbjct 907433 AGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGT 907492
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | |||||||
Sbjct 907493 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 907552
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 907553 TTGTCCTGGATCTT 907566
>seq5214
Length=3698012
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||| || | |||| |||||| ||||||||||| || || || || ||
Sbjct 3523185 AGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGG 3523126
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || || || || || | |||||| || || || || | ||| ||
Sbjct 3523125 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 3523066
Query 34609 TTGTC 34613
|||||
Sbjct 3523065 TTGTC 3523061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314708775620957
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