Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5277 105 4e-18 seq4172 98.7 6e-16 seq5214 82.4 5e-11 >seq5277 Length=7425378 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||||||||||||||| || |||||| ||| || || ||||| || || || Sbjct 1194151 GCCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 1194092 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | || || ||||| ||||| || || || | |||||| || || || || Sbjct 1194091 CAAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGG 1194032 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||| ||||| |||| || | || ||| | ||| || || | ||| | Sbjct 1194031 AATGCCCTCTTTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAA 1193973 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||||| ||||||||||| | || ||||| || || |||||| Sbjct 1193972 CCTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCATG 1193923 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||| || || || |||||| || ||||| || || || Sbjct 1193923 GCCACCACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1193864 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || ||||| ||||| ||||| || | |||||| || || || || Sbjct 1193863 AAGAGTGCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGG 1193804 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| ||| | || || | ||| || || | ||| | Sbjct 1193803 AATGCCCTCCTTGTC-CTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAA 1193745 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || || ||||| || ||||| || ||||||||| Sbjct 1193744 CTTCAAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCATG 1193695 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || || ||||| || ||||| ||||| || || || || Sbjct 1194369 AGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGT 1194310 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || |||||||| || |||||||| ||||| || || | ||||||| Sbjct 1194309 CCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCC 1194250 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || || | ||| ||||| |||||| |||| || Sbjct 1194249 TTGTCCTGGAT-TTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGT 1194191 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || |||| || ||||| || || |||||| Sbjct 1194190 AATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATG 1194151 Score = 95.1 bits (104), Expect = 8e-15 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| || || |||||||| ||||| ||||| || || Sbjct 1193001 AGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGG 1192942 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| || || |||||||| || | ||||| || || || || | |||||| Sbjct 1192941 CCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCC 1192882 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || || | ||| || || ||| || |||| || Sbjct 1192881 TTGTC-CTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGT 1192823 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 || || || || || || || |||||||| |||||||| |||||| Sbjct 1192822 AATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGATT 1192777 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||||||||||||||| || | ||| |||||| || ||||| ||||| || Sbjct 1193239 GCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGA 1193180 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | || || ||||| ||||| ||||| || | |||||| || || || || Sbjct 1193179 CAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGG 1193120 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | || |||||||| |||||| Sbjct 1193119 GATGCCTTCCTTGTCCTGGATCTT 1193096 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||| || || || |||||||| ||||| || || || Sbjct 1193695 GCCACCGCGAAGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGA 1193636 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||||| | || ||||| || || |||||||| || || ||||| || || || || Sbjct 1193635 TAGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGG 1193576 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| || | || || | ||| || || || | Sbjct 1193575 AATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAA 1193517 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||| |||||||| || ||||| || || ||||| Sbjct 1193516 CCTCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||||| || || || |||||| || ||||| || || ||| Sbjct 1193466 CCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193407 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||| || || || || | |||||| || || || || Sbjct 1193406 AGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGA 1193347 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| | || ||| | ||| || || || || Sbjct 1193346 ATTCCCTCCTTGTC-CTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAAC 1193288 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || ||||||||||| | || || || || || |||||| Sbjct 1193287 CTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCATG 1193239 >seq4172 Length=1033301 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| | |||| |||||| || ||||||||||| || | || || Sbjct 907205 AGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGT 907264 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || |||||||| || || || || | ||||||| Sbjct 907265 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 907324 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 907325 TTGTCCTGGATCTT 907338 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||| | |||| ||||||||| ||||| || || || || || || Sbjct 906977 AGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGT 907036 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || |||||||| || || || || | ||||||| Sbjct 907037 CCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 907096 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || || || ||| || |||| || Sbjct 907097 TTGTCCTGGATC-TTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGT 907155 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| || || || || || ||||||||| Sbjct 907156 GATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCATG 907195 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || || ||||| || ||||||||||| || | || || Sbjct 907433 AGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGT 907492 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | ||||||| Sbjct 907493 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 907552 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 907553 TTGTCCTGGATCTT 907566 >seq5214 Length=3698012 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || | |||| |||||| ||||||||||| || || || || || Sbjct 3523185 AGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGG 3523126 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || || || || | |||||| || || || || | ||| || Sbjct 3523125 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 3523066 Query 34609 TTGTC 34613 ||||| Sbjct 3523065 TTGTC 3523061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314708775620957