Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5375 178 1e-39 seq4488 152 4e-32 seq5277 145 7e-30 seq5214 143 2e-29 seq4172 141 8e-29 >seq5375 Length=646746 Score = 178 bits (196), Expect = 1e-39 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 |||||||| |||| |||| |||||| ||| || ||||| |||||||| || |||||| Sbjct 627727 TGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGCAAGATGCACGGCTTCTTGCGCA 627786 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||| ||||| |||||||| | |||||| | || |||| | | |||||| | ||| Sbjct 627787 TGTACTGGGCCAAAAAGATTCTCGAATGGACCGCCACGCCGGAACTGGCGCTGGAGTACG 627846 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 | || | | || || | ||||| | |||||||||||| | || |||||||| || | Sbjct 627847 CGATCCTGCTAAACGACAAGTACAGCCTTGATGGACGCGATCCCAACGGCTACGTGGGCT 627906 Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713 | |||||||| || |||| || |||||| ||||||||||||||| | || |||| Sbjct 627907 GCATGTGGTCCATCGGCGGCGTCCACGATATGGGATGGAAGGAGCGCGCCATTTTCGGCA 627966 Query 135714 AGATTCGCTATATGAACTATGACGGTTG 135741 || |||| || ||||||||| | || || Sbjct 627967 AGGTTCGGTACATGAACTATCAGGGCTG 627994 >seq4488 Length=533506 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| ||||| || ||||||||| | || || | || ||||| || | Sbjct 135303 CCATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTT 135362 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||| | || |||| || || || ||||| ||||| || ||||| || || |||| Sbjct 135363 CCGACACCATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATC 135422 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | ||||||||| || |||| || || ||| | || || |||| Sbjct 135423 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACA 135482 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||||||| | ||| |||| | || |||| |||||||| Sbjct 135483 ACATCCAGAAGGAGTCGACCCTCCATCTGGTGCTCCGCCTGCGCGGTGGCAT 135534 >seq5277 Length=7425378 Score = 145 bits (160), Expect = 7e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || ||||| || || ||||| || Sbjct 1193011 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTGGAGGTTGAACCTTC 1193070 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || || || || || ||||| |||||||| || || ||||| Sbjct 1193071 TGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 1193130 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 |||||| | || | || || || ||| |||| || | || |||| || ||||||| Sbjct 1193131 GCAGCGTCTCATTTTTGCTGGTAAGCAACTGGAGGATGGC-CGTACGTTGTCGGATTACA 1193189 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || ||||||||||| || || ||||| |||||| | || |||||||| Sbjct 1193190 ACATCCAGAAGGAGTCGACTTTGCACTTGGTGTTGCGTCTTCGTGGTGGCAT 1193241 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | |||||| | || || || || ||| Sbjct 1192784 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACTTTGGAGGTCGAGCCTTCC 1192843 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || || ||||| ||||| || ||||| || || ||||| Sbjct 1192844 GATACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAG 1192903 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || | ||||| | || |||||||||||||| Sbjct 1192904 CAGCGACTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGTACTCTTTCCGATTACAAC 1192963 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || ||| | || |||||| | ||| | || |||||||| Sbjct 1192964 ATTCAGAAAGAATCCACCCTTCACTTGGTTCTCCGTCTCCGTGGTGGCAT 1193013 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || |||||| | ||||| || || ||||| || || Sbjct 1194151 CATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACACTGGAGGTGGAGCCATC 1194210 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || ||||| || ||||| || || || || || || || Sbjct 1194211 TGACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCA 1194270 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | |||||||| || ||||| ||| | || | ||||||||||| Sbjct 1194271 GCAGCGTTTGATCTTTGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCCGATTACAA 1194330 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| |||||| | || ||||| | ||| | || || || || Sbjct 1194331 CATCCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTACGCGGAGGAAT 1194381 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||||||| || | || ||||| || || || || || Sbjct 1193923 CATGCAAATCTTCGTGAAGACCCTGACCGGTAAAACCATAACTCTGGAGGTTGAGCCCTC 1193982 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || || || || || |||||||| ||||| || || ||||| Sbjct 1193983 TGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGATCA 1194042 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || ||| |||| || | ||| | || || ||||| Sbjct 1194043 GCAGCGTCTCATTTTCGCTGGTAAGCAACTGGAGGATGGCCGTACCTTGTCGGACTACAA 1194102 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || | || ||||| |||||| | ||||||||||| Sbjct 1194103 CATCCAGAAAGAGTCCACTCTGCACTTGGTGTTGCGTCTTCGGGGTGGCAT 1194153 >seq5214 Length=3698012 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || |||||||| Sbjct 3522968 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 3523027 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || ||||| ||||||||||| || || || ||||| Sbjct 3523028 GATACTATCGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 3523087 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| | ||| | || || || ||| Sbjct 3523088 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 3523147 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || || || ||||| ||||| |||| ||||| Sbjct 3523148 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 3523194 >seq4172 Length=1033301 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| ||||||||||| | || ||| | || || || || || Sbjct 907195 CATGCAGATCTTCGTTAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTC 907136 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || || ||||| || || || || || ||||| Sbjct 907135 CGATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 907076 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | |||||| || || |||| || | || | ||||| ||||| Sbjct 907075 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAA 907016 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| || || ||||||||| ||||| |||| || ||||| Sbjct 907015 CATCCAAAAGGAGTCCACTTTGCATTTGGTTCTGCGTCTGCGTGGAGGCAT 906965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434888885350080