Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028659.1 Length=142987 Score E Sequences producing significant alignments: (Bits) Value seq5078 86.0 6e-12 seq4086 86.0 6e-12 seq4085 86.0 6e-12 >seq5078 Length=1488007 Score = 86.0 bits (94), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 64617 TGGTGCTCGCAGTAGGACTTGAACCCACGACCTTCTCCTTACAAGGGAGTTGCTCTACCA 64676 |||||| | |||||||| ||||||||||||||| | ||||||||| ||||||||||| Sbjct 1444826 TGGTGCCCCCAGTAGGATTTGAACCCACGACCTACCGCTTACAAGGCGGTTGCTCTACC- 1444884 Query 64677 ACTGAGCTATACGAGCA 64693 ||||||||||| | ||| Sbjct 1444885 ACTGAGCTATAAGGGCA 1444901 >seq4086 Length=80244 Score = 86.0 bits (94), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 64617 TGGTGCTCGCAGTAGGACTTGAACCCACGACCTTCTCCTTACAAGGGAGTTGCTCTACCA 64676 |||||| | |||||||| ||||||||||||||| | ||||||||| ||||||||||| Sbjct 24745 TGGTGCCCCCAGTAGGATTTGAACCCACGACCTACCGCTTACAAGGCGGTTGCTCTACC- 24803 Query 64677 ACTGAGCTATACGAGCA 64693 ||||||||||| | ||| Sbjct 24804 ACTGAGCTATAAGGGCA 24820 >seq4085 Length=47143 Score = 86.0 bits (94), Expect = 6e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 64617 TGGTGCTCGCAGTAGGACTTGAACCCACGACCTTCTCCTTACAAGGGAGTTGCTCTACCA 64676 |||||| | |||||||| ||||||||||||||| | ||||||||| ||||||||||| Sbjct 41203 TGGTGCCCCCAGTAGGATTTGAACCCACGACCTACCGCTTACAAGGCGGTTGCTCTACC- 41261 Query 64677 ACTGAGCTATACGAGCA 64693 ||||||||||| | ||| Sbjct 41262 ACTGAGCTATAAGGGCA 41278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457399357629480