Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq4311 102 3e-17 >seq4311 Length=289319 Score = 102 bits (112), Expect = 3e-17 Identities = 214/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 40103 ATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTG-ACGTACCGGATGACCTCGCCGCG 40161 ||||| || || ||| |||||||| ||| || | || || || |||||| | || Sbjct 204786 ATCTGCGCCACACGGTCCGCCCCGTA-TTCACGCCGCACATAGGCTATCACCTCGTCTCG 204844 Query 40162 ACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGG 40219 || || | || ||||||||| |||| ||| ||||||||||| || || || ||||| Sbjct 204845 CCGGTCCTGACA--GAAGTCGATATCAAAGTCAGGCATGGACACACGTTCAGGATTCAGA 204902 Query 40220 AACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGAT-CCCGAGGCAGTA 40278 ||||| ||||| | || | | ||| ||||| | || ||||| | | || | Sbjct 204903 AACCGTTCGAACAGCAGATTGAACGGCAGCGGATCAATATCTGTGATGGTCAACGC-CCA 204961 Query 40279 GGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTT 40338 ||| |||| ||||| || |||| || ||||| || || ||| | | | | |||| Sbjct 204962 TGCGGCCAGAGAACCTGCACCCGACCCACGCCCCGGCCCCACCGGGATATCATGCGCCTT 205021 Query 40339 GGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398 |||| ||||||||| || |||| || |||||| ||||||||||||| | ||| Sbjct 205022 CCCCCACTGGATGAAGTCCGCAACGATCATGAAGTAACCGGGGAAGCCCATCTTGGAGAT 205081 Query 40399 CATGTCGATCTC 40410 || || | ||| Sbjct 205082 AATATCCAGCTC 205093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160396058699646