Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_028906.1
Length=75933
Score E
Sequences producing significant alignments: (Bits) Value
seq5078 129 3e-25
>seq5078
Length=1488007
Score = 129 bits (142), Expect = 3e-25
Identities = 451/699 (65%), Gaps = 9/699 (1%)
Strand=Plus/Minus
Query 66461 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCG 66520
|| || ||||| || || || | | ||||| || ||||| || || |||| ||
Sbjct 1314360 GATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTGGGTATTGGTGGGTTGCCC 1314301
Query 66521 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66580
| ||||| ||||||||||| ||||| |||||| || || || | || || ||
Sbjct 1314300 CGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCGCTG 1314241
Query 66581 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 66640
|| || | || | || || ||| ||||||| || | || || || |||||
Sbjct 1314240 CATGCCATTGCAGAAGCACAAAAGCGTGGTGGCACTTGTGCTTTTATTGATGCCGAGCAT 1314181
Query 66641 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66700
| |||| || | || ||||| ||| || ||||| | || ||||| || |
Sbjct 1314180 GCGTTGGATCCCGGTTATGCCAAAAAGCTGGGCGTGGATGTAGATAACCTGCTGATCAGC 1314121
Query 66701 CAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66760
||||| ||| | || || ||||| |||| || | || ||||| || ||||
Sbjct 1314120 CAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGCAGATACACTCGTGCGATCCGGCGCT 1314061
Query 66761 CTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66820
| | | | || || || || || || |||||||||||||| || || |||||
Sbjct 1314060 ATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACTGGTGCCGCGCGCAGAACTGGAAGGA 1314001
Query 66821 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAG 66880
||||| || || || || || ||||| || ||||| | ||| ||||| |||| |||
Sbjct 1314000 GACATGGGCGATAGCCATGTTGGCCTTCATGCGCGTTTGATGAGCCAGGCTTTGCGTAAG 1313941
Query 66881 CTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66940
|| || || || | | || |||| || |||| | | | | |||||| | ||| |
Sbjct 1313940 CTTACGGGTACGGTGGCACGCTCCAATACTCTGATGATTTTCCTGAACCAGATCCGCCTG 1313881
Query 66941 AAGATCG--GCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGA 66998
|| || | | | || | || ||| || || |||||||| || || || |||
Sbjct 1313880 AAAATTGGTGTGATGTTTGGTA--ATCCG---GAAACAACCACGGGTGGTAATGCCCTGA 1313826
Query 66999 GGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 67058
|||||| | || || ||||||||| | || ||||||| | ||||| ||||
Sbjct 1313825 AGTTCTATTCTTCCGTGCGTATGGATATTCGCCGCATCGGGTCTATCAAGGACAAGGATG 1313766
Query 67059 AGGCTGTC-GGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC 67117
||| || | || || | || || || ||||| || || |||||| |||| || || |
Sbjct 1313765 AGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGTTAAAAACAAGATGGCGCCACCTTTC 1313707
Query 67118 CGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 67156
|| | | || || || ||||||| || ||||||
Sbjct 1313706 CGTCAGGTAGAATTTGATATCATGTACGGCGAAGGCATC 1313668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242844730887486
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |