Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq5078 129 3e-25 >seq5078 Length=1488007 Score = 129 bits (142), Expect = 3e-25 Identities = 451/699 (65%), Gaps = 9/699 (1%) Strand=Plus/Minus Query 66084 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66143 || || ||||| || || || | | ||||| || ||||| || || |||| || Sbjct 1314360 GATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTGGGTATTGGTGGGTTGCCC 1314301 Query 66144 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66203 | ||||| ||||||||||| ||||| |||||| || || || | || || || Sbjct 1314300 CGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCGCTG 1314241 Query 66204 CACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCAC 66263 || || | || | || || ||| ||||||| ||| | || || || ||||| Sbjct 1314240 CATGCCATTGCAGAAGCACAAAAGCGTGGTGGCACTTGTGCTTTTATTGATGCCGAGCAT 1314181 Query 66264 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66323 | |||| || | || ||||| ||| || ||||| | || ||||| || | Sbjct 1314180 GCGTTGGATCCCGGTTATGCCAAAAAGCTGGGCGTGGATGTAGATAACCTGCTGATCAGC 1314121 Query 66324 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66383 ||||| || | || || ||||| |||| || | || ||||| || |||| Sbjct 1314120 CAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGCAGATACACTCGTGCGATCCGGCGCT 1314061 Query 66384 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66443 | | | | || || || ||| || || |||||||||||||| || || ||||| Sbjct 1314060 ATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACTGGTGCCGCGCGCAGAACTGGAAGGA 1314001 Query 66444 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66503 ||||| || || || || || ||||| || ||||| | ||| ||||| |||| ||| Sbjct 1314000 GACATGGGCGATAGCCATGTTGGCCTTCATGCGCGTTTGATGAGCCAGGCTTTGCGTAAG 1313941 Query 66504 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66563 || || || || | | || |||| || |||| | | | | |||||| | ||| | Sbjct 1313940 CTTACGGGTACGGTGGCACGCTCCAATACTCTGATGATTTTCCTGAACCAGATCCGCCTG 1313881 Query 66564 AAGATCG--GCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGA 66621 || || | | | || | || ||| || || |||||||| || || || ||| Sbjct 1313880 AAAATTGGTGTGATGTTTGGTA--ATCCG---GAAACAACCACGGGTGGTAATGCCCTGA 1313826 Query 66622 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 66681 |||||| | || || || |||||| | || ||||||| | ||||| |||| Sbjct 1313825 AGTTCTATTCTTCCGTGCGTATGGATATTCGCCGCATCGGGTCTATCAAGGACAAGGATG 1313766 Query 66682 AGGCTGTC-GGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC 66740 ||| || | || || | || || || ||||| || || |||||| |||| || || | Sbjct 1313765 AGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGTTAAAAACAAGATGGCGCCACCTTTC 1313707 Query 66741 CGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 66779 || | | || || || ||||||| || |||||| Sbjct 1313706 CGTCAGGTAGAATTTGATATCATGTACGGCGAAGGCATC 1313668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240944056655700