Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq5078 123 1e-23 >seq5078 Length=1488007 Score = 123 bits (136), Expect = 1e-23 Identities = 450/699 (64%), Gaps = 9/699 (1%) Strand=Plus/Minus Query 65748 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 65807 || || ||||| || || || | | ||||| || ||||| || || |||| || Sbjct 1314360 GATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTGGGTATTGGTGGGTTGCCC 1314301 Query 65808 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 65867 | ||||| ||||||||||| ||||| |||||| || || || | || || || Sbjct 1314300 CGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCGCTG 1314241 Query 65868 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 65927 || || | || | || || ||| ||||||| || | || || || ||||| Sbjct 1314240 CATGCCATTGCAGAAGCACAAAAGCGTGGTGGCACTTGTGCTTTTATTGATGCCGAGCAT 1314181 Query 65928 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 65987 | |||| || | || ||||| ||| || ||||| | || ||||| || | Sbjct 1314180 GCGTTGGATCCCGGTTATGCCAAAAAGCTGGGCGTGGATGTAGATAACCTGCTGATCAGC 1314121 Query 65988 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66047 ||||| || | || || ||||| |||| || | || ||||| || |||| Sbjct 1314120 CAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGCAGATACACTCGTGCGATCCGGCGCT 1314061 Query 66048 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66107 | | | | || || || ||| || || |||||||||||||| || || ||||| Sbjct 1314060 ATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACTGGTGCCGCGCGCAGAACTGGAAGGA 1314001 Query 66108 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66167 ||||| || || || || || ||||| || ||||| | ||| ||||| |||| ||| Sbjct 1314000 GACATGGGCGATAGCCATGTTGGCCTTCATGCGCGTTTGATGAGCCAGGCTTTGCGTAAG 1313941 Query 66168 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66227 || || || || | | || |||| || |||| | | | | |||||| | ||| | Sbjct 1313940 CTTACGGGTACGGTGGCACGCTCCAATACTCTGATGATTTTCCTGAACCAGATCCGCCTG 1313881 Query 66228 AAGATCG--GCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGA 66285 || || | | | || | || ||| || || |||||||| || || || ||| Sbjct 1313880 AAAATTGGTGTGATGTTTGGTA--ATCCG---GAAACAACCACGGGTGGTAATGCCCTGA 1313826 Query 66286 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 66345 |||||| | || || || |||||| | || ||||||| | ||||| |||| Sbjct 1313825 AGTTCTATTCTTCCGTGCGTATGGATATTCGCCGCATCGGGTCTATCAAGGACAAGGATG 1313766 Query 66346 AGGCTGTC-GGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC 66404 ||| || | || || | || || || ||||| || || |||||| |||| || || | Sbjct 1313765 AGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGTTAAAAACAAGATGGCGCCACCTTTC 1313707 Query 66405 CGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 66443 || | | || || || ||||||| || |||||| Sbjct 1313706 CGTCAGGTAGAATTTGATATCATGTACGGCGAAGGCATC 1313668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242406359894633