Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5074 183 3e-41 >seq5074 Length=4358836 Score = 183 bits (202), Expect = 3e-41 Identities = 400/597 (67%), Gaps = 14/597 (2%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| |||||| |||| ||| ||| | |||||| | ||| |||| | ||| ||| Sbjct 1652289 AGCTTGGGGAATGGTCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCCACGTGATTC 1652348 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 ||||||| |||| || |||| || ||||| | || || || || ||| ||| Sbjct 1652349 AGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGACCCGTTACA 1652408 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||| |||||||| ||||| || |||||||| ||||| || | ||| Sbjct 1652409 TGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGACCC 1652468 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------ATTCGCGACGTAG 6733 ||||| | | ||| || ||||||||||| || || || | | ||| ||| Sbjct 1652469 ATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACATAG 1652528 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || || ||| ||| ||||| || || ||||| || | ||| || ||||| Sbjct 1652529 AACTGCGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGGAATGTCCGATGGATTCCAT 1652588 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGG----TTCCGCTTCAAGGTGTCGATCACGTA 6849 || |||| | ||| | ||||| |||| ||||| | |||||||||||| | Sbjct 1652589 GCCGACATGATGATGCGCCTGTC-CGAGGGATTATTCCG---GATGGTGTCGATCACCTG 1652644 Query 6850 CTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCC 6909 ||| ||| || |||| ||| | ||||| | |||| | ||||||||| || Sbjct 1652645 TCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGTGCCATACTCCGCTCC 1652704 Query 6910 AAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA 6969 |||||| | ||||||||| ||||| |||||||||| || || | | || | | Sbjct 1652705 AAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCCAACGGCACGCTCCGTGTG 1652764 Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGA 7029 |||| |||||||||| || || | | | || |||||||||| | ||| | || Sbjct 1652765 CCCCAGCTTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTGGC 1652824 Query 7030 CGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 | ||| ||||| | ||| ||| ||||||||| |||||||||||| |||| Sbjct 1652825 CTGCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCAGAGCAGCTCCTCGGCCAC 1652881 Score = 183 bits (202), Expect = 3e-41 Identities = 400/597 (67%), Gaps = 14/597 (2%) Strand=Plus/Minus Query 34259 GTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCC 34318 |||| |||||||||||| ||||||||| ||| ||| | ||||| ||| | || Sbjct 1652881 GTGGCCGAGGAGCTGCTCTGGTTCGTGGCGGGCAAGACGGATGCCAAGCTGCTGCAGGCC 1652822 Query 34319 CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC 34378 | ||| | |||||||||| || | | | || || |||||||||| |||| | Sbjct 1652821 AAGAACGTGCACATCTGGGACGGGAACAGCACCAGGGAGTTCCTGGACAAGCTGGGGCAC 1652762 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 | || | | || || |||||||||| ||||| ||||||||| | |||||||| Sbjct 1652761 ACGGAGCGTGCCGTTGGAGATCTGGGCCCGGTGTACGGCTTCCAGTGGCGGCACTTTGGA 1652702 Query 34439 GCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498 ||||||||| | |||| | ||||| | ||| |||| || ||| ||| | Sbjct 1652701 GCGGAGTATGGCACCTGCGATGACGACTACACTGGAAAGGGCATCGATCAGTTGCGACAG 1652642 Query 34499 GTGATCGACACCTTGAAGCGGAA----CCCTGATGACAGAAGGATCGTGATGTGCGCGTG 34554 |||||||||||| | ||||| |||| ||||| | ||| | |||| || || Sbjct 1652641 GTGATCGACACCATC---CGGAATAATCCCTCG-GACAGGCGCATCATCATGTCGGCATG 1652586 Query 34555 GAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTA 34614 ||| || ||| | || ||||| || || ||||| ||| ||| || ||||| Sbjct 1652585 GAATCCATCGGACATTCCGAAAATGGCCCTGCCGCCGTGTCACTGCCTGGCGCAGTTCTA 1652526 Query 34615 CGTCGCGAAT------GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGG 34668 ||| | | || || || ||||||||||| || ||| | | |||||||| Sbjct 1652525 TGTCTCCCAGACGCGCGGCGAACTCTCCTGCCAGCTGTACCAAAGGAGCGCCGACATGGG 1652466 Query 34669 GTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 | || ||||| |||||||| || ||||| |||||||| |||||||||| ||||| Sbjct 1652465 TCTGGGCGTGCCCTTCAACATCGCCTCCTACGCCCTGCTCACCCACATGATCGCCCATGT 1652406 Query 34729 CGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAA 34788 ||| || || || || | ||||| || |||| || |||| |||||||||| Sbjct 1652405 AACGGGTCTGAAGCCAGGCGACTTTGTGCACACCATGGGCGACACGCACGTCTACCTGAA 1652346 Query 34789 CCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 ||| | |||| ||| | |||||| | ||| ||| |||| |||||| |||| Sbjct 1652345 TCACGTGGAGCCGCTGAAGGAGCAGCTGGAGCGAACGCCGAGACCATTCCCCAAGCT 1652289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231979792880