Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq5074 183 3e-41
>seq5074
Length=4358836
Score = 183 bits (202), Expect = 3e-41
Identities = 400/597 (67%), Gaps = 14/597 (2%)
Strand=Plus/Plus
Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559
|||| |||||| |||| ||| ||| | |||||| | ||| |||| | ||| |||
Sbjct 1652289 AGCTTGGGGAATGGTCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCCACGTGATTC 1652348
Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619
||||||| |||| || |||| || ||||| | || || || || ||| |||
Sbjct 1652349 AGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGACCCGTTACA 1652408
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| |||||||||| |||||||| ||||| || |||||||| ||||| || | |||
Sbjct 1652409 TGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGACCC 1652468
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------ATTCGCGACGTAG 6733
||||| | | ||| || ||||||||||| || || || | | ||| |||
Sbjct 1652469 ATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACATAG 1652528
Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793
|| || ||| ||| ||||| || || ||||| || | ||| || |||||
Sbjct 1652529 AACTGCGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGGAATGTCCGATGGATTCCAT 1652588
Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGG----TTCCGCTTCAAGGTGTCGATCACGTA 6849
|| |||| | ||| | ||||| |||| ||||| | |||||||||||| |
Sbjct 1652589 GCCGACATGATGATGCGCCTGTC-CGAGGGATTATTCCG---GATGGTGTCGATCACCTG 1652644
Query 6850 CTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCC 6909
||| ||| || |||| ||| | ||||| | |||| | ||||||||| ||
Sbjct 1652645 TCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGTGCCATACTCCGCTCC 1652704
Query 6910 AAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA 6969
|||||| | ||||||||| ||||| |||||||||| || || | | || | |
Sbjct 1652705 AAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCCAACGGCACGCTCCGTGTG 1652764
Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGA 7029
|||| |||||||||| || || | | | || |||||||||| | ||| | ||
Sbjct 1652765 CCCCAGCTTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTGGC 1652824
Query 7030 CGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086
| ||| ||||| | ||| ||| ||||||||| |||||||||||| ||||
Sbjct 1652825 CTGCAGCAGCTTGGCATCCGTCTTGCCCGCCACGAACCAGAGCAGCTCCTCGGCCAC 1652881
Score = 183 bits (202), Expect = 3e-41
Identities = 400/597 (67%), Gaps = 14/597 (2%)
Strand=Plus/Minus
Query 34259 GTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCC 34318
|||| |||||||||||| ||||||||| ||| ||| | ||||| ||| | ||
Sbjct 1652881 GTGGCCGAGGAGCTGCTCTGGTTCGTGGCGGGCAAGACGGATGCCAAGCTGCTGCAGGCC 1652822
Query 34319 CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC 34378
| ||| | |||||||||| || | | | || || |||||||||| |||| |
Sbjct 1652821 AAGAACGTGCACATCTGGGACGGGAACAGCACCAGGGAGTTCCTGGACAAGCTGGGGCAC 1652762
Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438
| || | | || || |||||||||| ||||| ||||||||| | ||||||||
Sbjct 1652761 ACGGAGCGTGCCGTTGGAGATCTGGGCCCGGTGTACGGCTTCCAGTGGCGGCACTTTGGA 1652702
Query 34439 GCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498
||||||||| | |||| | ||||| | ||| |||| || ||| ||| |
Sbjct 1652701 GCGGAGTATGGCACCTGCGATGACGACTACACTGGAAAGGGCATCGATCAGTTGCGACAG 1652642
Query 34499 GTGATCGACACCTTGAAGCGGAA----CCCTGATGACAGAAGGATCGTGATGTGCGCGTG 34554
|||||||||||| | ||||| |||| ||||| | ||| | |||| || ||
Sbjct 1652641 GTGATCGACACCATC---CGGAATAATCCCTCG-GACAGGCGCATCATCATGTCGGCATG 1652586
Query 34555 GAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTA 34614
||| || ||| | || ||||| || || ||||| ||| ||| || |||||
Sbjct 1652585 GAATCCATCGGACATTCCGAAAATGGCCCTGCCGCCGTGTCACTGCCTGGCGCAGTTCTA 1652526
Query 34615 CGTCGCGAAT------GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGG 34668
||| | | || || || ||||||||||| || ||| | | ||||||||
Sbjct 1652525 TGTCTCCCAGACGCGCGGCGAACTCTCCTGCCAGCTGTACCAAAGGAGCGCCGACATGGG 1652466
Query 34669 GTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728
| || ||||| |||||||| || ||||| |||||||| |||||||||| |||||
Sbjct 1652465 TCTGGGCGTGCCCTTCAACATCGCCTCCTACGCCCTGCTCACCCACATGATCGCCCATGT 1652406
Query 34729 CGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAA 34788
||| || || || || | ||||| || |||| || |||| ||||||||||
Sbjct 1652405 AACGGGTCTGAAGCCAGGCGACTTTGTGCACACCATGGGCGACACGCACGTCTACCTGAA 1652346
Query 34789 CCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845
||| | |||| ||| | |||||| | ||| ||| |||| |||||| ||||
Sbjct 1652345 TCACGTGGAGCCGCTGAAGGAGCAGCTGGAGCGAACGCCGAGACCATTCCCCAAGCT 1652289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448231979792880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |