Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4172 111 1e-19 seq5277 86.0 4e-12 >seq4172 Length=1033301 Score = 111 bits (122), Expect = 1e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || ||||| |||||||| || |||| || | ||||| ||||||| Sbjct 907080 GATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGAC 907021 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||||| ||| |||||||||||||||| ||||| ||||||| ||| Sbjct 907020 TACAACATCCAAAAGGAGTCCACTTTGCATTTGGTTCTGCGTCTGCGTGGAGGC 906967 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || ||||| || || || || |||||||| || |||| Sbjct 906873 GACAAGGAAGGAATCCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAG 906814 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||| ||||||||||| || ||| ||||||||||||||| || Sbjct 906813 GATGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACTTTGCATTTGGTCCTG 906754 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| ||||||| |||| Sbjct 906753 CGTCTGCGTGGTGGCG 906738 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || |||||||| || |||| Sbjct 907329 GACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAA 907270 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||||||| |||||||| || ||| ||||||||||||||| | Sbjct 907269 GATGGACGTACCTTGTCCGATTATAACATCCAGAAGGAGTCCACTTTGCATTTGGTGCTC 907210 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 907209 CGTCTCCGTGGAGGC 907195 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || ||||| |||||||| || |||| Sbjct 907557 GACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAG 907498 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | ||||||||||| |||||||| || || || | || ||||| || Sbjct 907497 GACGGACGTACTTTGTCCGATTATAACATCCAGAAGGAATCGACCCTTCACTTGGTCCTG 907438 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 907437 CGTCTGCGTGGAGGC 907423 >seq5277 Length=7425378 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || ||||| || | |||||||| || || ||| |||| Sbjct 1193105 GACAAGGAAGGCATCCCCCCAGATCAGCAGCGTCTCATTTTTGCTGGTAAGCAACTGGAG 1193164 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||||| |||||||||||||| || ||| |||||||| ||||| ||| Sbjct 1193165 GATGGCCGTACGTTGTCGGATTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTGTTG 1193224 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 1193225 CGTCTTCGTGGTGGC 1193239 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || ||||| || | ||||| || || || ||| |||| Sbjct 1194017 GACAAAGAGGGCATTCCCCCAGATCAGCAGCGTCTCATTTTCGCTGGTAAGCAACTGGAG 1194076 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||||| || ||||||||||| |||||| |||| |||| ||||| ||| Sbjct 1194077 GATGGCCGTACCTTGTCGGACTACAACATCCAGAAAGAGTCCACTCTGCACTTGGTGTTG 1194136 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | || || ||| Sbjct 1194137 CGTCTTCGGGGTGGC 1194151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355838854030683