Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5214 181 2e-40 seq4172 168 2e-36 seq5277 161 2e-34 seq4488 152 1e-31 >seq5214 Length=3698012 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||||||||| || || |||||||| || | ||||| | |||||| Sbjct 3523179 AGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCT 3523120 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || ||||||| |||||| |||||| Sbjct 3523119 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCC 3523060 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || |||||||| || || || ||| ||||| |||||||| ||| Sbjct 3523059 TGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTC 3523000 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 3522999 TTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 3522965 >seq4172 Length=1033301 Score = 168 bits (186), Expect = 2e-36 Identities = 156/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||||||||| || |||||||||||||| | | ||| | |||||||||||||||||| || Sbjct 907225 AGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGTCCATCTTCCAGCTGCTTTCC 907284 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | || || || || || |||| ||| ||||||||||||||||| || Sbjct 907285 GGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTT 907344 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||| || |||||||| || || |||||||| | |||||| ||||| || || ||||| Sbjct 907345 CACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGAGT 907404 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 907405 CTTCACGAAGATCTGCAT 907422 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || | ||||||||| || |||||||| || || | || || | |||||| Sbjct 906755 AGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 906814 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || || || || || | ||||||||||||| Sbjct 906815 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCC 906874 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||| || || || ||||| | |||||| ||| Sbjct 906875 TGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCCAAAGTGATGGTC 906934 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| ||||| | |||||| Sbjct 906935 TTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||||||||| ||||||||||| || || | || || | |||||| ||||||||||| || Sbjct 906997 AGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTTCC 907056 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || | || || || || || || | ||| ||||||||||||||||| || Sbjct 907057 GGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 907116 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||| |||||||| || || |||||||| | |||||| ||||| || || | ||| Sbjct 907117 CACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGT 907176 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 907177 CTTAACGAAGATCTGCAT 907194 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | |||||| || || || || |||||||||||||| | | Sbjct 907426 TCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAA 907485 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||| || ||||||||||| || ||||| || | || || || || || |||| Sbjct 907486 AGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAAT 907545 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| ||||| || |||||||| || || |||||||| Sbjct 907546 TCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTC 907605 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| ||||| || || | |||||| || || | ||||| || Sbjct 907606 CAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATT 907653 >seq5277 Length=7425378 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || ||||| || |||||||| || || | ||| || | |||||| Sbjct 1193451 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCT 1193392 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || ||||||||||| || || || || || ||||||| ||| ||||||||| Sbjct 1193391 TCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCC 1193332 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || |||||||| || ||||| ||||| ||||||||| |||||||| || Sbjct 1193331 TGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTT 1193272 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || | ||||| Sbjct 1193271 TTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | ||| | ||| ||||| || |||||||| ||||||| | || Sbjct 1193233 ACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGT 1193174 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||| ||||| || || || || || || || || || || || | || Sbjct 1193173 ACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCC 1193114 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| |||||||| || ||||| ||||| ||||||||| || Sbjct 1193113 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAG 1193054 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| ||||| || ||||| || || | |||||| Sbjct 1193053 AGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| | |||||| || || || ||||||||||| || || | ||||| Sbjct 1193688 CGAAGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTT 1193629 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || ||||||||||| || || || | || || || || || |||| || Sbjct 1193628 CGTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCC 1193569 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| ||||| || || ||||| ||||| ||||||||| ||| Sbjct 1193568 TCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGA 1193509 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || | ||||| || || | ||||| Sbjct 1193508 GTGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| |||||||||||||| |||||||| || |||| | ||| | ||||| ||||| || Sbjct 1194127 GTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCCAGTTG 1194068 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || || || || || || || |||| || || |||||||||||||| Sbjct 1194067 CTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTTGTCCTGGATCTT 1194008 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| || ||||| |||||| |||||||| ||||| || || || || || Sbjct 1194007 GGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTTATGGTTTTACCGGT 1193948 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||| Sbjct 1193947 CAGGGTCTTCACGAAGATTTGCAT 1193924 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| ||||| || ||||| ||||| | ||| || | |||||| Sbjct 1192995 AGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCT 1192936 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || || || || |||| || ||||||||| Sbjct 1192935 TCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1192876 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || || || || || ||||| | ||| || ||| Sbjct 1192875 TGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTC 1192816 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| ||||| | ||||||||| Sbjct 1192815 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1192781 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || || || || |||||||| ||||| | || || | ||| || Sbjct 1194363 AGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCC 1194304 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| || ||||| | || || ||||| || |||| ||| ||||||||| Sbjct 1194303 TCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 1194244 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||| || || ||||||||||| || ||||| || || || ||| Sbjct 1194243 TGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGGTC 1194184 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 1194183 TTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || ||||| || |||||||| || || | ||| || Sbjct 1193917 ACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1193858 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||| ||||| || || || || || || || || || || |||| || Sbjct 1193857 GCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCC 1193798 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| || || || || || || ||||| |||||| ||||| || || Sbjct 1193797 CTCCTTGTCCTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAG 1193738 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| || || | |||||| Sbjct 1193737 GGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 >seq4488 Length=533506 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| || |||| ||||| | ||||| Sbjct 135516 AGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCC 135457 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || ||||||||| Sbjct 135456 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 135397 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || ||||||||||| || || ||||| | ||||| ||| Sbjct 135396 TGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTC 135337 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 135336 TTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159071370473585