Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5214 129 4e-25 seq5277 104 2e-17 seq4488 84.2 1e-11 >seq5214 Length=3698012 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || |||||||| || || || | Sbjct 3522965 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 3523024 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| ||| | | |||| ||||| | || ||| ||||||||||| | || ||||| Sbjct 3523025 TCGGATACTATCGAAAATGTTAAAGC-CAAGATTCAGGACAAAGAAGGAATTCCTCCAGA 3523083 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 3523084 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 3523143 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || |||||||| || || || || Sbjct 3523144 TAACATTCAGAAGGAGTCCACTTTGCACTTGGT 3523176 >seq5277 Length=7425378 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || |||||||| || ||||| | | Sbjct 1193012 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTGGAGGTTGAACCTTCT 1193071 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| ||||| | || |||||||| Sbjct 1193072 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 1193131 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || |||||||| || | || || || ||||||||| Sbjct 1193132 CAGCGTCTCATTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACGTTGTCGGATTACAAC 1193191 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||||| || || || || || || Sbjct 1193192 ATCCAGAAGGAGTCGACTTTGCACTTGGTGTT 1193223 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || |||||||| |||||||| || ||||| | | Sbjct 1193468 ATGCAAATCTTCGTGAAGACCTTAACCGGAAAAACCATCACTCTGGAGGTTGAACCTTCT 1193527 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| || || | || |||||||| Sbjct 1193528 GATACCATTGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGATCA 1193586 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||||||||| || || || || | ||| || || ||| ||||| Sbjct 1193587 GCAGCGATTGATTTTTGCCGGCAAGCAGCTTGAGGATGGACGAACCCTATCCGACTACAA 1193646 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 1193647 CATCCAAAAGGAATCGAC 1193664 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || || || || || || || | | Sbjct 1194152 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACACTGGAGGTGGAGCCATCT 1194211 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | ||||| || || | || ||||| || Sbjct 1194212 GACACCATTGAGAATGTGAAGGCTAAAA-TCCAGGACAAGGAGGGAATTCCCCCAGACCA 1194270 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||||||||| || |||| |||| ||||||| | ||||||||| Sbjct 1194271 GCAGCGTTTGATCTTTGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCCGATTACAA 1194330 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 1194331 CATCCAGAAGGAATCGAC 1194348 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || ||||| || ||||| || ||||| || | Sbjct 1193924 ATGCAAATCTTCGTGAAGACCCTGACCGGTAAAACCATAACTCTGGAGGTTGAGCCCTCT 1193983 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || |||||||| || | || |||||||| Sbjct 1193984 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGATCAG 1194043 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || |||||||| || | || || || || |||||| Sbjct 1194044 CAGCGTCTCATTTTCGCTGGTAAGCAACTGGAGGATGGCCGTACCTTGTCGGACTACAAC 1194103 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 1194104 ATCCAGAAAGAGTCCAC 1194120 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 ||| | | ||||||||||| || || || ||| | || || || || || ||| | || | Sbjct 1192773 AATAAATCAAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACTTTGGAGG 1192832 Query 23660 TTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 | || | | || || |||| ||| | || | || | || ||||| || || | Sbjct 1192833 TCGAGCCTTCCGATACGATTGAGAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGCATT 1192891 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || |||||||| ||||| | || ||||||||||| || || ||||| | || ||| | Sbjct 1192892 CCCCCAGATCAGCAGCGACTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGTACTCTT 1192951 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||||||||| || ||||| ||||| | || || ||| Sbjct 1192952 TCCGATTACAACATTCAGAAAGAATCCACCCTTCACTTGGTT 1192993 >seq4488 Length=533506 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| | || || || | | Sbjct 135305 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 135364 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| ||||| || || | || |||||||| Sbjct 135365 GACACCATCGAGAATGTGAAGGC-TAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCA 135423 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| || | ||||| | || ||||| Sbjct 135424 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAA 135483 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 135484 CATCCAGAAGGAGTCGAC 135501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337987235277932