Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5277 131 4e-25 seq4172 131 4e-25 seq4488 125 2e-23 seq1974 123 6e-23 seq5214 113 1e-19 seq5079 100 7e-16 seq4704 86.0 1e-11 seq30 86.0 1e-11 >seq5277 Length=7425378 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||||||||| || | |||||||||| | ||| | |||||| Sbjct 1192995 AGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCT 1192936 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| ||||| || || || || ||||| || |||||||| Sbjct 1192935 TCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1192876 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| || || || || || | || || || || || || ||| Sbjct 1192875 TGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTC 1192816 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || || | || | |||||||| Sbjct 1192815 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1192781 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | ||| || || || |||| |||||||| | ||| || Sbjct 1193233 ACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGT 1193174 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| ||||| || || || || || || || || || || || Sbjct 1193173 ACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCC 1193114 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| || ||||| || || | ||| || || | Sbjct 1193113 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAG 1193054 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| || || | ||| | ||||| Sbjct 1193053 AGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 >seq4172 Length=1033301 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | || | |||||| || || |||| ||||| |||| || ||| Sbjct 906745 ACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 906804 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| | || || || || || || || || Sbjct 906805 GCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCC 906864 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||||||| |||||||| || || | || || || || Sbjct 906865 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCCAA 906924 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || | ||| || Sbjct 906925 AGTGATGGTCTTGCCTGTGAGAGTCTT 906951 >seq4488 Length=533506 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || || || || |||| ||||| || | || || | ||||| Sbjct 135516 AGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCC 135457 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || |||||||| Sbjct 135456 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 135397 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 135396 TGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTC 135337 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| || | ||||| Sbjct 135336 TTGCCGGTGAGGGTTTT 135320 >seq1974 Length=1073 Score = 123 bits (136), Expect = 6e-23 Identities = 129/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| ||||||| || ||| |||| || ||||| ||| |||| ||||| ||| | || || Sbjct 182 CAAATTTACAATGTAATTGTTACTGCACATGCTTTTATTATAATTTT-TTTATAGTAATA 240 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || || |||||||| || |||||||| | || ||||| ||| Sbjct 241 CCAATTATAATTGGAGGATTTGGTAATTGATTAGTACCTTTAATATTAGGAGCTCCAGAT 300 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || || ||| | | || |||||||| |||||||||||||| ||| Sbjct 301 ATAGCATTCCCACGAATAAATAATATAAGATTTTGATTACTACCCCCT 348 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || |||||||||||||| ||||||||||| || | ||||| || ||||| |||| Sbjct 754 TTCTGGGTGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCTGC 695 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||||||||| |||||| ||||||| || ||||| Sbjct 694 TGGGTCAAAAAAGGAAGTATTTAAATTTCGGTCTGTTAA 656 >seq5214 Length=3698012 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| | |||||| || || || | || || || | | || Sbjct 3523189 ACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 3523130 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 3523129 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 3523070 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| |||||| || || || | ||| || || | Sbjct 3523069 TTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAG 3523010 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||| | || || | ||| | ||||| || Sbjct 3523009 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 3522965 >seq5079 Length=1084440 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| |||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 998188 TGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 998129 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGC 7854 |||||| || |||||||||| |||||||||| |||| | | |||| || | ||| ||| Sbjct 998128 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGCCGTACTCCCCAGGCGGTGTGCTTATCGC 998069 Query 7855 GTTAGCT 7861 ||||||| Sbjct 998068 GTTAGCT 998062 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || |||||||||||||||| |||||||||||| ||| || |||| | Sbjct 805548 GGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGTCGA 805607 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||| ||||| Sbjct 805608 AAGACGACGTATAGGGCCTGAC 805629 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || |||||||||||||||| |||||||||||| ||| || |||| | Sbjct 1001093 GGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGTCGA 1001152 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||| ||||| Sbjct 1001153 AAGACGACGTATAGGGCCTGAC 1001174 >seq4704 Length=42152 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || |||||||||||||||| |||||||||||| ||| || |||| | Sbjct 41489 GGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGTCGA 41430 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||| ||||| Sbjct 41429 AAGACGACGTATAGGGCCTGAC 41408 >seq30 Length=443100 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || |||||||||||||||| |||||||||||| ||| || |||| | Sbjct 153182 GGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGTCGA 153241 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||| ||||| Sbjct 153242 AAGACGACGTATAGGGCCTGAC 153263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192448248647726