Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5074 179 3e-40 seq4674 96.9 3e-15 >seq5074 Length=4358836 Score = 179 bits (198), Expect = 3e-40 Identities = 357/532 (67%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656 || ||| ||| |||| || ||||| ||| | ||| ||||| | ||||||| ||| Sbjct 1652280 TTGATCAACAGCTTGGGGAATGGTCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCC 1652339 Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716 ||||| | ||||||||||| | || |||| |||||| ||||| || || || | || Sbjct 1652340 ACGTGATTCAGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGA 1652399 Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || || || || || ||||||| ||||| || | |||| ||||||||| |||||||| Sbjct 1652400 CCCGTTACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 1652459 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGC-TC-- 29833 || || |||||||| | ||| ||||| |||||||| ||||| || ||| ||| || Sbjct 1652460 CCCAGACCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGTTCGCCG-CGCGTCTG 1652518 Query 29834 ----ACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTT 29888 || || ||||| | | |||| || ||||| || |||||||| | ||| Sbjct 1652519 GGAGACATAGAACTG-CGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGGAATGTCCG 1652577 Query 29889 TGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA 29948 || ||||| || ||| ||||||||||||||| || || |||| |||| ||| | Sbjct 1652578 ATGGATTCCATGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCCGGATGGTGTCGA 1652637 Query 29949 CGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNN 30008 | | | ||| |||||| | ||| | || | |||||| Sbjct 1652638 TCACCTGTCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGTGCCATACT 1652697 Query 30009 NNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30068 | || |||| ||||||||| ||||||||||| ||||| ||||| | | | | Sbjct 1652698 CCGCTCCAAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCCAACGGCACGCT 1652757 Query 30069 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30120 | | ||| |||||||| || || |||| | ||| |||||||||| Sbjct 1652758 CCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAT 1652809 >seq4674 Length=694708 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 49933 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 49992 || || || | ||||||||||||||| | ||| || ||||||||| ||||| || || Sbjct 523894 TTGAAGAGCACGACGCCGAGGTTGCCGCGGTAATCCTCGTCCACCACGCCGGCGCCCACA 523953 Query 49993 TCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 50052 || || || || |||| |||||| || || | ||||| || | ||||||| |||| Sbjct 523954 TCGATGAAGTTCTTCACGGCCAGTCCAGAGCGTGGAGCAACGCGGCCGTAGGAGCCCTCC 524013 Query 50053 GGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCAC 50108 || | || ||| ||||| ||||| || | |||| |||| || ||| ||||| Sbjct 524014 GGAACCTGCACCTGCAGGTCGGTCTTCACAATGGCCTTGCCCCGGGCGGGAACCAC 524069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406136325831094