Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5074 212 5e-50 seq4674 102 6e-17 >seq5074 Length=4358836 Score = 212 bits (234), Expect = 5e-50 Identities = 368/532 (69%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 27091 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 27150 || ||| ||| |||| || ||||| ||| | ||| ||||| ||||||||| ||| Sbjct 1652280 TTGATCAACAGCTTGGGGAATGGTCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCC 1652339 Query 27151 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 27210 ||||||| |||||||||||| | ||| |||| |||||| ||||| || || || | || Sbjct 1652340 ACGTGATTCAGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGA 1652399 Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 || || || || || ||||||| ||||| || | |||| ||||||||| ||||| || Sbjct 1652400 CCCGTTACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 1652459 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT--- 27327 || || |||||||| | ||| ||||| ||||| || ||||| || || ||| | Sbjct 1652460 CCCAGACCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGTTCGCC-GCGCGTCTG 1652518 Query 27328 ----ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 27383 || || ||||| | | ||| ||||| || || ||||| | ||| Sbjct 1652519 GGAGACATAGAACTGCGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGGAATGTCCGA 1652578 Query 27384 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 27443 || ||||| || ||| ||||||||||||||| || || |||| |||| ||| | Sbjct 1652579 TGGATTCCATGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCCGGATGGTGTCGAT 1652638 Query 27444 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACT 27502 | | | ||| |||||| | ||| | || | |||||| | | || || | |||| Sbjct 1652639 CACCTGTCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGTGC-CATACT 1652697 Query 27503 CTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 27562 | ||||| || |||| ||| ||||| ||||||||||| ||||| ||||| | | | | Sbjct 1652698 CCGCTCCAAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCCAACGGCACGCT 1652757 Query 27563 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 27614 | | ||| |||||||| || || |||| | ||| |||||||||| Sbjct 1652758 CCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAT 1652809 >seq4674 Length=694708 Score = 102 bits (112), Expect = 6e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 44920 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 44979 || || || | ||||||||||||||| | ||| || ||||||||| ||||| || || Sbjct 523894 TTGAAGAGCACGACGCCGAGGTTGCCGCGGTAATCCTCGTCCACCACGCCGGCGCCCACA 523953 Query 44980 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 45039 || || || || |||| |||||| || || | ||||| || | ||||||| |||| Sbjct 523954 TCGATGAAGTTCTTCACGGCCAGTCCAGAGCGTGGAGCAACGCGGCCGTAGGAGCCCTCC 524013 Query 45040 GGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCCCTGCCTAAGGAGGGGACCAC 45095 || | || ||| |||||| ||||| || | |||| |||| || ||| ||||| Sbjct 524014 GGAACCTGCACCTGCAGGTCGGTCTTCACAATGGCCTTGCCCCGGGCGGGAACCAC 524069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369482751209699