Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5214 401 9e-107 >seq5214 Length=3698012 Score = 401 bits (444), Expect = 9e-107 Identities = 1214/1857 (65%), Gaps = 26/1857 (1%) Strand=Plus/Plus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 |||||||||| || |||||||| | | || || ||||| || ||||||||||| Sbjct 3420198 TTCTTATCCACGGTGAACTGAATCGCGTTCGCAGCTGGCTTTGTGCGCAGATAGTACATG 3420257 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || || || || || |||| ||| || || ||| ||||||||| || | Sbjct 3420258 CCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTC 3420317 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || || || | |||||| || | |||||||||||| |||||||| || || | ||| || Sbjct 3420318 GGCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCG 3420377 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 |||||||| || ||| ||| | |||||||| | || ||| ||| | || | Sbjct 3420378 GCCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGC-GA-A 3420435 Query 77010 TCATCTGG---AAGGTTTGTATTTT--GAATGGAACCACCATCTG-ATATAATTGTATTC 77063 | ||||| | || | || || | || ||||| || ||| | || || ||| Sbjct 3420436 CCTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACC-CCTGCTGGAAATGATCTGGTTC 3420494 Query 77064 TTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 || ||||| || | |||||| | | ||| ||||| | || | | |||| | || || Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 | || ||||| || |||| || | || |||||||| ||| | || || || || | | Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 ||||| ||||| |||| ||||| ||||| || || || ||||| ||||| |||| | Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674 Query 77244 CTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 77302 || |||| ||| || || | |||| || || || | | ||||||||| || || Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733 Query 77303 TGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATT 77362 | || ||||| | ||||| || |||||||| || || | || | Sbjct 3420734 CGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTC 3420793 Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 || |||||||| || ||||| | || || ||||| || |||||||| || ||||| Sbjct 3420794 GTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCGTA 3420853 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||||| |||||||| |||| || ||| | | ||||| || || | || | Sbjct 3420854 GTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGGAA 3420913 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | ||||| | ||| || || || ||||| || || || || | || | ||| || Sbjct 3420914 TCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGCCT 3420973 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 | ||| || | || | ||||| | |||||| | || ||||| || || || ||||| Sbjct 3420974 CAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTTGAG 3421033 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC-CATC 77659 |||||| ||| || || ||||| ||||| |||||| | ||||| | Sbjct 3421034 ATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATACGTCTTCTCGGG 3421093 Query 77660 TATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTT 77719 | || |||||||| | || || ||||| || || || ||||| | ||| | | Sbjct 3421094 CGTGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGCGC 3421153 Query 77720 GGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTG 77779 || ||| | | || ||||| || | ||| || || ||||| ||||| | ||| || || Sbjct 3421154 GGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTG 3421213 Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 ||||||||| | ||||| || ||||| | || || ||||| | |||||||| | ||| Sbjct 3421214 GTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACCTG 3421273 Query 77840 TGATTCGATAATAGATTTCCA-GACGACTCTAGCTTTTATCAT-AGATTTGTATCGCCTC 77897 || || || || | ||| | |||| | || || | | | | || | | || | | Sbjct 3421274 CGACTCAATGATGGCGAACCACAAGGACTGT-GCCTTGACCGTCCGGTTCGCA-CGGCCC 3421331 Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 || || ||||| || || ||| ||| || ||||| ||||| ||||| | || || Sbjct 3421332 TCCTGCTCGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGCCG 3421391 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 ||||||| | || ||||||| |||||||| || | ||| || |||||||| || Sbjct 3421392 GGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGAAA 3421451 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 ||||| |||||||| || || || ||||| |||| | || || || || || || Sbjct 3421452 AGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTG 3421511 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 ||||| || || || || ||||| | | || || ||||| || || || || || || Sbjct 3421512 TTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCG 3421571 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | || || || || || |||||||| | || | || || || | || Sbjct 3421572 AAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGACC 3421631 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257 || | ||| || | | || || || || ||||| || || | || | | || | Sbjct 3421632 CTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCCTTG 3421691 Query 78258 GCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 || || || |||||| || || || ||||||||| || || || | || Sbjct 3421692 GCCCGGAT----GCAATGGACATTCAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGC 3421747 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 ||| ||| || | | | |||| ||||| || ||| || ||||| | || || || Sbjct 3421748 GCACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAA 3421807 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 || |||| ||| | || || |||| ||| | || || || || || || Sbjct 3421808 GCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGT 3421867 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 || | || || || || ||||| || || | || | || |||||| | ||| Sbjct 3421868 GAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATG 3421927 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 ||||| | ||| || ||||||| ||| ||||| || | || | |||| ||| | Sbjct 3421928 GATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTCCGTTTCT 3421987 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 |||| || ||| || ||| | |||||||||||||| |||||||| |||||| Sbjct 3421988 CTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTC 3422044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694621658038560