Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5214 334 1e-86 >seq5214 Length=3698012 Score = 334 bits (370), Expect = 1e-86 Identities = 1197/1856 (64%), Gaps = 24/1856 (1%) Strand=Plus/Plus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 |||||||||| ||||||||||| | | ||||| ||||| || ||||||||||| Sbjct 3420198 TTCTTATCCACGGTGAACTGAATCGCGTTCGCAGCTGGCTTTGTGCGCAGATAGTACATG 3420257 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 || || || || || |||| ||| || || ||| || |||||| || || Sbjct 3420258 CCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTC 3420317 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || || || | |||||| || | |||||||||||| |||||||| || || | ||| || Sbjct 3420318 GGCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCG 3420377 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 |||||||| || ||| ||| | |||||||| | || ||| ||| | || | Sbjct 3420378 GCCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGAT-CGCGA-A 3420435 Query 75605 TCATCTGGAAGATTTG------TATTTTGAATGGATCCGCCATCAGATATAATTGTATTC 75658 | ||||| || | | | || || || || || | || || || ||| Sbjct 3420436 CCTTCTGG-GGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAAATGATCTGGTTC 3420494 Query 75659 TTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACA 75718 || || || || | |||||| | ||||||||| | || | | |||| | || || Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554 Query 75719 ATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACA 75778 | || ||||| || |||| || | || |||||||| ||| | || || || || | | Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614 Query 75779 GATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAA 75838 ||||| ||||| |||| ||||| ||||| || || || ||||| ||||| |||| | Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674 Query 75839 CTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 75897 || |||| ||| || || | |||| || || || | | ||||||||| || || Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733 Query 75898 TGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATT 75957 | || ||||| | ||||| || |||||||| ||||| | || | Sbjct 3420734 CGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTC 3420793 Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 || ||||| || | || || | || || || || || || || || || ||||| Sbjct 3420794 GTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCGTA 3420853 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATT---AAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 ||||| |||||||| |||| || ||| |||| | ||||| || || | || Sbjct 3420854 GTAAATGGTTTCGAATATCTGCTGATTCAAAAGACC---GGCTTCCTCGCTTTCGTATGG 3420910 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 | | | ||||| | || || || | ||||| || || || || | || | ||| Sbjct 3420911 GAATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATG 3420970 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 ||| ||| || | | | ||||| | || ||| | || || || || || || || Sbjct 3420971 CCTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTT 3421030 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TTTTC-C 76251 |||||||||| ||| || || ||||| ||||| |||||| | | ||| | Sbjct 3421031 GAGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATACGTCTTCTC 3421090 Query 76252 ATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 | || ||||| || || || || ||||| || || || || || | ||| | | Sbjct 3421091 GGGCGTGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGG 3421150 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 || ||| | | || || ||||| | ||| || |||||||| || |||| ||| || Sbjct 3421151 CGCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTG 3421210 Query 76372 TTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431 ||||||||||| |||| || || ||||| | || | ||||| | || ||||| | Sbjct 3421211 CTGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCAC 3421270 Query 76432 CTGTGATTCGATAATAGATTTCCA-GACGACTCTAGCTTTTATTAT-AGATTTGTATCGC 76489 ||| || || || || | ||| | |||| | || || | | | || | | || Sbjct 3421271 CTGCGACTCAATGATGGCGAACCACAAGGACTGT-GCCTTGACCGTCCGGTTCGCA-CGG 3421328 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| || ||||| || || | | ||| || ||||| ||||| ||||| | || Sbjct 3421329 CCCTCCTGCTCGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGG 3421388 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || || |||| | ||||||||||| ||||| || || | ||| || |||||||| Sbjct 3421389 CCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATG 3421448 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || ||||| |||||||| || || || ||||| |||| | | || || || || Sbjct 3421449 AAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCG 3421508 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || ||||| || || || |||||||| | | || || ||||| || || || || || Sbjct 3421509 GTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATG 3421568 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | |||| || || || || |||||||| | || | || || || | Sbjct 3421569 GCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAG 3421628 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 || || | ||| || | | ||| || || || ||||| || || | || | | || Sbjct 3421629 ACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCC 3421688 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 || || || | | | || || || ||||||||| ||| ||||| | || Sbjct 3421689 TTGGCCCGGATGCAATGGACATTCAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGCG 3421748 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || ||| || | | |||||||||| || || || ||||| | || || || Sbjct 3421749 CACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAG 3421808 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 || |||| ||| | || || |||| ||| | || || || || || ||| Sbjct 3421809 CACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGTG 3421868 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGA 77089 || | || || || || ||||| || || | | || || || ||| | ||| Sbjct 3421869 AAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATGG 3421928 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATT 77149 ||||| | || || ||||||| ||| ||||| || || || | |||| ||| | Sbjct 3421929 ATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTCCGTTTCTC 3421988 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 |||| || ||| || ||| | |||||||||||||| |||||||| |||||| Sbjct 3421989 TTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTC 3422044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712886018489280