Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq4311 109 2e-19 >seq4311 Length=289319 Score = 109 bits (120), Expect = 2e-19 Identities = 216/313 (69%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 40095 ATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTG-ACGTACCTGATCACGTCGCCCCG 40153 ||||| || || |||||||||||| ||| || | || || ||||| ||| | Sbjct 204786 ATCTGCGCCACACGGTCCGCCCCGTA-TTCACGCCGCACATAGGCTATCACCTCGTC--- 204841 Query 40154 TCGCCGGTCATC---GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAG 40210 ||||||||| | ||||||||| |||| ||| ||||||||||| || || || ||||| Sbjct 204842 TCGCCGGTCCTGACAGAAGTCGATATCAAAGTCAGGCATGGACACACGTTCAGGATTCAG 204901 Query 40211 GAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT-GCCGAGGCAGT 40269 ||||| ||||| | || | ||| | || || | |||||||| | | | || Sbjct 204902 AAACCGTTCGAACAGCAGATTGAACGGCAGCGGATCAATATCTGTGATGGTCAACGC-CC 204960 Query 40270 AGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCT 40329 | ||| |||| ||||| ||| |||| ||||| || || || ||| | | | | ||| Sbjct 204961 ATGCGGCCAGAGAACCTGCACCCGACCCACGCCCCGGCCCCACCGGGATATCATGCGCCT 205020 Query 40330 TGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGA 40389 | |||| ||||||||| || |||| || |||||| ||||| |||| || | || Sbjct 205021 TCCCCCACTGGATGAAGTCCGCAACGATCATGAAGTAACCGGGGAAGCCCATCTTGGAGA 205080 Query 40390 TCATGTCGATCTC 40402 | || || | ||| Sbjct 205081 TAATATCCAGCTC 205093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160130475822712