Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq484 185 6e-42 >seq484 Length=19729 Score = 185 bits (204), Expect = 6e-42 Identities = 461/688 (67%), Gaps = 44/688 (6%) Strand=Plus/Plus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 216 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 275 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 276 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 335 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCG 58908 | || ||||||| |||| || || | | |||||| | ||||||| |||||| Sbjct 336 GATCTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGTCGATCATGAACAACGTGCG 395 Query 58909 CTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCC 58968 ||||| ||||| | ||||||||| ||| ||| ||| ||||||| | ||| ||| | | Sbjct 396 CTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGTTCTGCCTCGGATAGGAGGC 455 Query 58969 GAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGCG 59028 |||||||||||| ||| | || | |||| | || | ||| | ||| | ||| Sbjct 456 GAGCTTGCGCAGAATCTGGCTGGGCGCGACGCTCCCAGCCGCGATGGTCGCGGCGATGCG 515 Query 59029 CAGGATGTCGTCCCAG-TGGGCACG--CA---CGTGCTTGATGTTCAGGGTGCCGCCGAT 59082 |||||||||| |||| || || || || | || ||||| ||| || ||||| Sbjct 516 CAGGATGTCGGGCCAGTTGCGCTCGATCATGGCCTGATTGATCTTC------CCACCGAT 569 Query 59083 CAGCGGGCGCAA---CGTCGG-GTA------GGCTTGCACGCCCTGCGGCACGTACAGCT 59132 || | ||||| || ||| ||| || ||| |||| | | | ||| Sbjct 570 CAAGGCCCGCAAGTGCGCCGGCGTAGCCGATGGATTGAACGCATAGAG-------CCGCT 622 Query 59133 TGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCA-GGTGCATCAGG 59191 ||| || | ||||| ||||| ||||| ||||||||| |||| || | ||||||| | Sbjct 623 TGG--ACGGC-AGGTCACGGATACGCGGGGCGAAGCGGTAGCCGAGAATGGTGCAT-GCG 678 Query 59192 GCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCG 59251 |||||||||||||||||||||||| | ||||||| | | ||||| ||| | || | Sbjct 679 GCAAAGACGTGATCGGTGAAGCCGCCTGTGTCGGCGAACTGCTCGCGGATATGACGGCCA 738 Query 59252 GACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGC-GGACGCCGACATTCAC 59310 | |||| |||| ||||||||| | ||||| | |||| | || || | | Sbjct 739 GCATCGTTCATGAGCAAGCCGTCGAGGATATAGGGCGCTTCGCTTGCCGTCG-CGGGGAT 797 Query 59311 CACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGT----C 59366 ||| |||| || |||||| || |||||||||| |||| | || |||| | | Sbjct 798 CACCTGGGTCGCGAGCGGCGCATATTGGTCGGAGACATGGCTGTA----AGCCTTCAAGC 853 Query 59367 CCGGCTCGCTACCGTACTTCGGGTTGAC 59394 ||||| | ||||| |||| |||||| Sbjct 854 CCGGCATATTGCCGTATTTCGCGTTGAC 881 Score = 183 bits (202), Expect = 2e-41 Identities = 462/689 (67%), Gaps = 45/689 (7%) Strand=Plus/Plus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 18126 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 18185 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 18186 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 18245 Query 58849 GG-CATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGC 58907 | | || ||||||| |||| || || | | |||||| | ||||||| ||||| Sbjct 18246 GATCGTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGTCGATCATGAACAACGTGC 18305 Query 58908 GCTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGC 58967 |||||| ||||| | ||||||||| ||| ||| ||| ||||||| | ||| ||| | Sbjct 18306 GCTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGTTCTGCCTCGGATAGGAGG 18365 Query 58968 CGAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGC 59027 ||||||||||||| ||| | || | |||| | || | ||| | ||| | || Sbjct 18366 CGAGCTTGCGCAGAATCTGGCTGGGCGCGACGCTCCCAGCCGCGATGGTCGCGGCGATGC 18425 Query 59028 GCAGGATGTCGTCCCAG-TGGGCACG--CA---CGTGCTTGATGTTCAGGGTGCCGCCGA 59081 ||||||||||| |||| || || || || | || ||||| ||| || |||| Sbjct 18426 GCAGGATGTCGGGCCAGTTGCGCTCGATCATGGCCTGATTGATCTTC------CCACCGA 18479 Query 59082 TCAGCGGGCGCAA---CGTCGG-GTA------GGCTTGCACGCCCTGCGGCACGTACAGC 59131 ||| | ||||| || ||| ||| || ||| |||| | | | || Sbjct 18480 TCAAGGCCCGCAAGTGCGCCGGCGTAGCCGATGGATTGAACGCATAGAG-------CCGC 18532 Query 59132 TTGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCA-GGTGCATCAG 59190 |||| || | ||||| ||||| ||||| ||||||||| |||| || | ||||||| Sbjct 18533 TTGG--ACGGC-AGGTCACGGATACGCGGGGCGAAGCGGTAGCCGAGAATGGTGCAT-GC 18588 Query 59191 GGCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTC 59250 ||||||||||||||||||||||||| | ||||||| | | ||||| ||| | || | Sbjct 18589 GGCAAAGACGTGATCGGTGAAGCCGCCTGTGTCGGCGAACTGCTCGCGGATATGACGGCC 18648 Query 59251 GGACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGC-GGACGCCGACATTCA 59309 | |||| |||| ||||||||| | ||||| | |||| | || || | | Sbjct 18649 AGCATCGTTCATGAGCAAGCCGTCGAGGATATAGGGCGCTTCGCTTGCCGTCG-CGGGGA 18707 Query 59310 CCACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGT---- 59365 ||| |||| || |||||| || |||||||||| |||| | || |||| | Sbjct 18708 TCACCTGGGTCGCGAGCGGCGCATATTGGTCGGAGACATGGCTGTA----AGCCTTCAAG 18763 Query 59366 CCCGGCTCGCTACCGTACTTCGGGTTGAC 59394 |||||| | ||||| |||| |||||| Sbjct 18764 CCCGGCATATTGCCGTATTTCGCGTTGAC 18792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330877305744214