Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4172 123 6e-23 seq5277 114 3e-20 seq4488 105 2e-17 seq5214 98.7 2e-15 >seq4172 Length=1033301 Score = 123 bits (136), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| ||||| || ||||||||||| |||| | ||| | ||||| Sbjct 906755 AGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 906814 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | | |||||| || | | |||||||||||| | Sbjct 906815 TCCAGCTGCTTT--CCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGT 906872 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || ||| |||| | | | || ||| ||| || || | ||| || | Sbjct 906873 CCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCCAAAGTGATGG 906932 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||| || |||| |||||| Sbjct 906933 TCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 Score = 123 bits (136), Expect = 6e-23 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||| | ||| ||||| || |||||||| ||||||| || || | Sbjct 907204 GAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACG 907263 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||||||||| | | |||||| || | | ||||| Sbjct 907264 TCCATCTTCCAGCTGCTTT--CCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCC 907321 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||| |||| | | | || ||| ||| || || | | Sbjct 907322 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAA 907381 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || |||||||||||||||| |||||| Sbjct 907382 GTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| ||||| |||||||||||||| |||| | ||| | ||||| Sbjct 906983 AGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 907042 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || | | |||||| || | | |||||| ||||| | Sbjct 907043 TCCAGCTGCTTT--CCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGT 907100 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || || |||| | | | || ||| ||| || || | ||| || | Sbjct 907101 CCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGG 907160 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || | |||||| ||||||| |||||| Sbjct 907161 TCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| || || || || |||||||| ||||||| ||||| | || || Sbjct 907439 AGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGTCCGTCC 907498 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || | | |||||| || | | ||||| ||||| | Sbjct 907499 TCCAGCTGCTTT--CCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGT 907556 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || ||| |||| | | | || ||| ||| || || | ||| || | Sbjct 907557 CCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGG 907616 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || | |||||||||||| | ||||| || Sbjct 907617 TCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATT 907653 >seq5277 Length=7425378 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||| || ||||||||||| |||| | ||| | |||||||| | Sbjct 1193446 CAAG-TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCA 1193388 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || |||||||| || | |||||| || | | ||||| ||||| || |||| Sbjct 1193387 ACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAA 1193328 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || || |||| | | | || ||| || || || ||||| || ||||| | Sbjct 1193327 TTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTAC 1193268 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| ||||| Sbjct 1193267 CGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || || ||||| || ||||||||||||| | ||| | Sbjct 1193002 GAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACG 1192943 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || ||||| ||||| || | |||||| || | | || || || Sbjct 1192942 GCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTC 1192883 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| |||| | | || ||| ||| || || | ||| Sbjct 1192882 CTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGT 1192823 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| || ||||| || | |||||||| |||| ||||||||| Sbjct 1192822 AATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1192781 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 1193902 CAAG-TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCA 1193844 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || || || || | |||||| || | | || || ||||| || |||| Sbjct 1193843 GTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAA 1193784 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| |||| | | | || || ||| |||||||| || || || |||| Sbjct 1193783 TTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTGC 1193724 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||||||||||| |||||| Sbjct 1193723 CAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || |||||||||||||||| | ||| | || || || | Sbjct 1194358 CAAG-TGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCCTCCA 1194300 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| ||||| | | ||||||||| | | ||||| ||||| || || | Sbjct 1194299 ACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGA 1194240 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| |||| | | |||| || ||| || || || ||||| || |||| Sbjct 1194239 TTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGGTCTTGC 1194180 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| ||||| Sbjct 1194179 CAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || |||||||||||||| | || || | ||||| || | Sbjct 1193218 CAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATCCTCCA 1193160 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || || || || | |||||| || | | ||| |||||||| || || | Sbjct 1193159 GTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGA 1193100 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | | | || ||| || || || ||||| || || |||| Sbjct 1193099 TCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTCTTGC 1193040 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||||||||||| |||||| Sbjct 1193039 CCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || || || |||||||||||||| |||| || |||| ||||| Sbjct 1193680 GAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATC 1193621 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| || || | | |||||| || | | || || ||||| || Sbjct 1193620 CTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 1193561 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || ||| |||| | | | || ||| || || || ||||| || || Sbjct 1193560 CTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGT 1193501 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || | ||||||||||||| ||||| Sbjct 1193500 TTTTCCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| |||||||| ||||||||||| || | || || | ||||| || | Sbjct 1194130 CAAG-TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCCA 1194072 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || || | |||||| || | | || || || || || || | Sbjct 1194071 GTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTTGTCCTGGA 1194012 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | | | || || ||| || || ||||| || ||||| | Sbjct 1194011 TCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTTATGGTTTTAC 1193952 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| ||||| Sbjct 1193951 CGGTCAGGGTCTTCACGAAGATTTGCAT 1193924 >seq4488 Length=533506 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| || || ||||| || ||||||||||| || | | || | ||||| Sbjct 135517 GAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATC 135458 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | |||||| || | | || || ||||| || Sbjct 135457 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 135398 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || ||| |||| | | |||| ||| ||| || || | || || || Sbjct 135397 CTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGT 135338 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || ||||| |||| |||||| Sbjct 135337 CTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 >seq5214 Length=3698012 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || || ||||| || || | | || | |||||||| | Sbjct 3523174 CAAG-TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCA 3523116 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | |||||| || | | |||||||| || || |||| Sbjct 3523115 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAA 3523056 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| | || | | || || || || |||||||| || || |||| Sbjct 3523055 TCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGC 3522996 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| ||||| ||||||| |||||| || Sbjct 3522995 CCGTGAGGGTCTTAACGAAGATCTGCATCTT 3522965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153740541306859