Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq5080 89.7 6e-13 seq5079 89.7 6e-13 seq5078 84.2 3e-11 seq4424 82.4 9e-11 >seq5080 Length=249237 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 |||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 80006 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 80064 >seq5079 Length=1084440 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 |||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 782338 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 782280 >seq5078 Length=1488007 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/87 (82%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763 || || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 1125975 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 1126034 Query 17764 GTCCCTTCAGTCCCGTATGCCACTTTA 17790 | ||| ||| || | ||||||||| Sbjct 1126035 GCCCCGTCACTCGC----GCCACTTTA 1126057 >seq4424 Length=98381 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/86 (81%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763 || || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 55369 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 55310 Query 17764 GTCCCTTCAGTCCCGTATGCCACTTT 17789 | ||| ||| || | |||||||| Sbjct 55309 GCCCCGTCACTCGC----GCCACTTT 55288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596266733102640