Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5277 159 2e-34 seq4488 143 2e-29 seq4172 136 3e-27 seq5214 129 4e-25 >seq5277 Length=7425378 Score = 159 bits (176), Expect = 2e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || ||||| |||||||||||||||| || ||| |||| || Sbjct 1194361 CACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCCTC 1194302 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| ||||||||||||||||||||||| |||| || | || ||||| ||| Sbjct 1194301 CAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 1194242 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||||| | | |||||||| | | |||||||||| ||||| ||||| Sbjct 1194241 GATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGGTCTT 1194182 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||||||||||||||||||||||| Sbjct 1194181 GCCAGTTAGGGTCTTCACGAAGATTTGCATG 1194151 Score = 134 bits (148), Expect = 1e-26 Identities = 173/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | |||||||| ||| | || |||||| ||||||||||| Sbjct 1193245 TTGCATGCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTA 1193186 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | || | || ||||| ||||| || ||||| || | |||||||||||| Sbjct 1193185 ATCCGACAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATC 1193126 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| ||| ||||| ||||| |||| | ||||| || | | Sbjct 1193125 TGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTATCAGAAG 1193067 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||||| || || ||||| ||||| ||||||||||||||||| |||||| Sbjct 1193066 GTTCAACCTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 1193011 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||||||||||||||||| |||| || || | || || Sbjct 1193676 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCA 1193617 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||| ||||| ||||||||||||| || | || ||||| ||| Sbjct 1193616 AGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1193557 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||| || | | ||| ||||||| || || || ||| Sbjct 1193556 ATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTT 1193497 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||||||||||||| Sbjct 1193496 CCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468 Score = 131 bits (144), Expect = 1e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| ||| | | |||| |||||| || |||||| ||||||||||| Sbjct 1193473 TTGCATACCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTA 1193414 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || ||| | || |||| ||| || || || ||||| | |||||||||||| Sbjct 1193413 GTCGGAAAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATC 1193354 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | || ||||| ||| || || ||||| |||| | ||||| || | | Sbjct 1193353 TGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTCAC-GTTCTCAATGGTATCAGAAG 1193295 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||||| || || || || || || |||||||| ||||||||||||||| Sbjct 1193294 GTTCAACCTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCATG 1193239 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| || || || ||||||||||||| || || | || || Sbjct 1192992 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCA 1192933 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||| ||||||||||||| || | || ||||| ||| Sbjct 1192932 AGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1192873 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || || |||| | || ||||||| ||||| ||||| Sbjct 1192872 ATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTG 1192813 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||| ||||| ||||| Sbjct 1192812 CCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784 Score = 120 bits (132), Expect = 2e-22 Identities = 172/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | |||||||| ||| || ||| ||| || ||||||||||| Sbjct 1194157 TTGCATGCCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTA 1194098 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | | || | || | || ||||| ||||| || || || || | ||||||||||| Sbjct 1194097 GTCCGACAAGGTACGGC-CATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGAT 1194039 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 ||| || | || || || ||| ||||| ||||| |||| | ||||| || | | Sbjct 1194038 CTGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTATCAGAG 1193980 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||| || || || || || || |||||||||||||||||||||||| Sbjct 1193979 GGCTCAACCTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCATG 1193923 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| ||||||||||| |||| || ||| | || ||| Sbjct 1193904 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCC 1193845 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || ||||| || | |||||||||||||| || | || ||||| ||| Sbjct 1193844 AGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1193785 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | | | ||||| || | || || || || | || || ||||| Sbjct 1193784 ATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTG 1193725 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||||||||||||||| |||||| Sbjct 1193724 CCAGTTAAGGTCTTCACGAAGATCTGCATG 1193695 >seq4488 Length=533506 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| || || || |||||| ||||||||||| || | || ||| | || || Sbjct 135514 CACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTC 135455 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||||||||| || | || ||||| ||| Sbjct 135454 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 135395 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | |||||||||| | |||||||||| || || ||||| Sbjct 135394 AATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 135335 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || |||||||| ||||| ||||| |||||| || Sbjct 135334 GCCGGTGAGGGTTTTCACAAAGATCTGCATGGTG 135301 >seq4172 Length=1033301 Score = 136 bits (150), Expect = 3e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||| || ||| | || ||||||||||| ||||| || Sbjct 906775 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAA 906834 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||||||||||| || | |||||||| ||| ||||| ||||| | Sbjct 906835 GATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 906894 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| |||| | || ||||||| || || ||||| || ||||| ||||| || Sbjct 906895 CTCGATGGTATCGGAAGGCTCGACCTCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGAC 906954 Query 44326 GAAGATTTGCATG 44338 ||||| |||||| Sbjct 906955 AAAGATCTGCATG 906967 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||| || | ||| |||||||||||||||||| || Sbjct 906964 CATGCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTC 907023 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| ||||| || ||||||||||||||||||| Sbjct 907024 GGACAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGG 907083 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| |||| | |||| | ||||| |||| | | Sbjct 907084 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTATCGGAAGGCT 907142 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || || ||||| || || | ||||| |||||||| |||||| Sbjct 907143 CAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCATG 907195 Score = 132 bits (146), Expect = 3e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186 ||||| || | ||| |||||| |||||||| ||||||| | || | || | || | Sbjct 907213 CACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTA-CGTCCATCTT 907271 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||||||||| ||||| |||||||||||||||||||||| || | || ||||| ||| Sbjct 907272 CCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCT 907331 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| |||| | || ||||||| || || |||| Sbjct 907332 GGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCT 907391 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || |||||||||||||| |||||| Sbjct 907392 TGCCAGTCAGAGTCTTCACGAAGATCTGCATG 907423 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||| |||||| || ||||| |||||||| ||||| Sbjct 907420 CATGCCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATC 907479 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | || |||| ||||||||||| ||||| || ||||||||||||||||||| Sbjct 907480 GGACAAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGG 907539 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| |||| | || Sbjct 907540 GGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTC 907599 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || ||||| || || | ||||||||||| |||||||| Sbjct 907600 AACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 907650 >seq5214 Length=3698012 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| | ||| |||||| || ||||| || || | | Sbjct 3523194 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 3523135 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || || ||||||| |||||||||||||| ||| Sbjct 3523134 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 3523075 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | ||||| || ||| ||||| |||| || || | || || || | | ||| || Sbjct 3523074 ATTCCTTCTTTGTCCTGAATCTTG-GCTTTAACATTTTCGATAGTATCCGACGGTTCGAC 3523016 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || || ||||| |||||||||||||| |||||||| ||||| Sbjct 3523015 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359966580897693