Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq5277 150 4e-31
seq4172 141 2e-28
seq4488 138 3e-27
seq5214 136 1e-26
>seq5277
Length=7425378
Score = 150 bits (166), Expect = 4e-31
Identities = 159/208 (76%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || || ||||| ||||| || ||||| ||| || ||
Sbjct 1193243 CAAATCTTCGTAAAGACCCTTACCGGTAAAACCATCACTCTGGAGGTTGAACCTTCTGAT 1193302
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| |||||||| || || ||||||||||| || ||||| ||||| || |||||
Sbjct 1193303 ACCATTGAGAACGTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAGCAG 1193362
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| ||||||||| | |||||||| | |||||| |||| || ||| ||
Sbjct 1193363 CGTCTCATCTTCGCAGGAAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAACATC 1193422
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || || || |||| ||
Sbjct 1193423 CAGAAGGAGTCTACCCTTCA-CTTGGTT 1193449
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || | || |||||||| ||||| || ||||| ||| || ||
Sbjct 1193471 CAAATCTTCGTGAAGACCTTAACCGGAAAAACCATCACTCTGGAGGTTGAACCTTCTGAT 1193530
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || |||||||||||||| || || || || || || |||||
Sbjct 1193531 ACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 1193590
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || || ||||| || ||||| || |||||| | || || |||| || ||| ||
Sbjct 1193591 CGATTGATTTTTGCCGGCAAGCAGCTTGAGGATGGACGAACCCTATCCGACTACAACATC 1193650
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| ||||| || || || ||||
Sbjct 1193651 CAAAAGGAATCGACCCTTCA-CTTG 1193674
Score = 122 bits (134), Expect = 2e-22
Identities = 153/206 (74%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || || || ||||| || || || ||||| || ||| ||
Sbjct 1193927 CAAATCTTCGTGAAGACCCTGACCGGTAAAACCATAACTCTGGAGGTTGAGCCCTCTGAT 1193986
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| |||||||| || ||||| ||||||||||| || || || || || |||||
Sbjct 1193987 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGATCAGCAG 1194046
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| || || ||||| || || || || || ||||| | || |||| | || || ||| |
Sbjct 1194047 CGTCTCATTTTCGCTGGTAAGCAACTGGAGGATGGCCGTAC-CTTGTCGGACTACAACAT 1194105
Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128
||| ||||| || || ||||| ||||
Sbjct 1194106 CCAGAAAGAGTCCACTCTGCA-CTTG 1194130
Score = 120 bits (132), Expect = 7e-22
Identities = 158/217 (73%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || ||||| || | || || || || || || | ||||| ||
Sbjct 1192781 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACTTTGGAGGTCGAG 1192837
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || || || ||||| || || |||||||||||||| || || || || ||
Sbjct 1192838 CCTTCCGATACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCA 1192897
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| ||||| ||||| ||||| || ||||| |||||||| | |||||| |||||
Sbjct 1192898 GATCAGCAGCGACTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGTACTCTTTCCGAT 1192957
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131
|| ||| | || |||||||| || || || |||| ||
Sbjct 1192958 TACAACATTCAGAAAGAATCCACCCTTCA-CTTGGTT 1192993
Score = 105 bits (116), Expect = 2e-17
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || || || || |||||||| || || || ||| ||
Sbjct 1193699 CAGATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCCTTGAAGTTGAGCCCTCTGAT 1193758
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || || ||||||||||| || || || || || || |||||
Sbjct 1193759 ACCATTGAGAATGTAAAGGCCAAAATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 1193818
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || || || || ||||| | |||||| |||| || ||| ||
Sbjct 1193819 CGTCTCATTTTTGCTGGTAAGCAACTGGAGGATGGTCGCACTCTTTCCGACTACAACATC 1193878
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || || || |||| ||
Sbjct 1193879 CAGAAGGAGTCTACCCTTCA-CTTGGTT 1193905
>seq4172
Length=1033301
Score = 141 bits (156), Expect = 2e-28
Identities = 152/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||||||||| || || ||||| | ||||| || || ||
Sbjct 906963 CAGATCTTTGTCAAGACTCTCACAGGCAAGACCATCACTTTGGAGGTCGAGCCTTCCGAT 906904
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || ||||| |||||||| ||||||||||| || || |||||
Sbjct 906903 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGATCAGCAG 906844
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||||| || |||||| | ||||| |||| || ||| ||
Sbjct 906843 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAACATC 906784
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || || || || |||||
Sbjct 906783 CAGAAGGAGTCCACTTTGCAT 906763
Score = 141 bits (156), Expect = 2e-28
Identities = 154/202 (76%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| ||||| || || || || ||||| | ||||| || || ||
Sbjct 907419 CAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 907360
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || ||||| |||||||| || ||||| || || || |||||
Sbjct 907359 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 907300
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | |||||||||||||| ||||| ||||||||| | || |||| ||||||||||| |
Sbjct 907299 CGTTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTAC-CTTGTCCGATTATAACAT 907241
Query 178103 CCAAAAAGAATCAACACTGCAT 178124
||| || || || || |||||
Sbjct 907240 CCAGAAGGAGTCCACTTTGCAT 907219
Score = 136 bits (150), Expect = 1e-26
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||| | || || || || ||||| | ||||| || || ||
Sbjct 907191 CAGATCTTCGTTAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 907132
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || ||||| |||||||| || |||||||| || || |||||
Sbjct 907131 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 907072
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||||||||| ||||| || |||||| | ||||| |||| || ||| ||
Sbjct 907071 CGTTTGATTTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAACATC 907012
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
||||| || || || ||||| | ||| ||
Sbjct 907011 CAAAAGGAGTCCACTTTGCATTTGGTTCTG 906982
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| ||| | || || || || ||||| | ||||| || || ||
Sbjct 907647 CAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 907588
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || ||||| |||||||| || ||||| || || || |||||
Sbjct 907587 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 907528
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||||||||| ||||| || || ||| | ||| | ||||||||||| ||
Sbjct 907527 CGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTATAACATC 907468
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || ||||| || || || ||||
Sbjct 907467 CAGAAGGAATCGACCCTTCA-CTTG 907444
>seq4488
Length=533506
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| ||||| || || || |||||| | |||||||| || |||
Sbjct 135308 CAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAC 135367
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || |||||||||||||| || || || || || || |||||
Sbjct 135368 ACCATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 135427
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || ||||| | || || | || || ||| ||
Sbjct 135428 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAACATC 135487
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 135488 CAGAAGGAGTCGACCCTCCATCTGGT 135513
>seq5214
Length=3698012
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| || ||||| ||| || ||
Sbjct 3522971 CAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 3523030
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || ||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 3523031 ACTATCGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 3523090
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| |||||||| | || || | || |||||| |
Sbjct 3523091 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATT 3523150
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || |||| ||||
Sbjct 3523151 CAGAAGGAGTCCACTTTGCA-CTTG 3523174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203647469586226
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