Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5277 150 4e-31 seq4172 141 2e-28 seq4488 138 3e-27 seq5214 136 1e-26 >seq5277 Length=7425378 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||| ||||| || ||||| ||| || || Sbjct 1193243 CAAATCTTCGTAAAGACCCTTACCGGTAAAACCATCACTCTGGAGGTTGAACCTTCTGAT 1193302 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || || ||||||||||| || ||||| ||||| || ||||| Sbjct 1193303 ACCATTGAGAACGTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAGCAG 1193362 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||||||| | |||||||| | |||||| |||| || ||| || Sbjct 1193363 CGTCTCATCTTCGCAGGAAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAACATC 1193422 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 1193423 CAGAAGGAGTCTACCCTTCA-CTTGGTT 1193449 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || | || |||||||| ||||| || ||||| ||| || || Sbjct 1193471 CAAATCTTCGTGAAGACCTTAACCGGAAAAACCATCACTCTGGAGGTTGAACCTTCTGAT 1193530 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||||||||||| || || || || || || ||||| Sbjct 1193531 ACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 1193590 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || ||||| || ||||| || |||||| | || || |||| || ||| || Sbjct 1193591 CGATTGATTTTTGCCGGCAAGCAGCTTGAGGATGGACGAACCCTATCCGACTACAACATC 1193650 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 1193651 CAAAAGGAATCGACCCTTCA-CTTG 1193674 Score = 122 bits (134), Expect = 2e-22 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || ||||| || || || ||||| || ||| || Sbjct 1193927 CAAATCTTCGTGAAGACCCTGACCGGTAAAACCATAACTCTGGAGGTTGAGCCCTCTGAT 1193986 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| ||||||||||| || || || || || ||||| Sbjct 1193987 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGATCAGCAG 1194046 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || || ||||| || || || || || ||||| | || |||| | || || ||| | Sbjct 1194047 CGTCTCATTTTCGCTGGTAAGCAACTGGAGGATGGCCGTAC-CTTGTCGGACTACAACAT 1194105 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| ||||| || || ||||| |||| Sbjct 1194106 CCAGAAAGAGTCCACTCTGCA-CTTG 1194130 Score = 120 bits (132), Expect = 7e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || || || || || || | ||||| || Sbjct 1192781 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACTTTGGAGGTCGAG 1192837 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||||| || || |||||||||||||| || || || || || Sbjct 1192838 CCTTCCGATACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCA 1192897 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| ||||| ||||| ||||| || ||||| |||||||| | |||||| ||||| Sbjct 1192898 GATCAGCAGCGACTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGTACTCTTTCCGAT 1192957 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||| | || |||||||| || || || |||| || Sbjct 1192958 TACAACATTCAGAAAGAATCCACCCTTCA-CTTGGTT 1192993 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || |||||||| || || || ||| || Sbjct 1193699 CAGATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCCTTGAAGTTGAGCCCTCTGAT 1193758 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || ||||||||||| || || || || || || ||||| Sbjct 1193759 ACCATTGAGAATGTAAAGGCCAAAATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 1193818 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || || || || ||||| | |||||| |||| || ||| || Sbjct 1193819 CGTCTCATTTTTGCTGGTAAGCAACTGGAGGATGGTCGCACTCTTTCCGACTACAACATC 1193878 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 1193879 CAGAAGGAGTCTACCCTTCA-CTTGGTT 1193905 >seq4172 Length=1033301 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||||||||| || || ||||| | ||||| || || || Sbjct 906963 CAGATCTTTGTCAAGACTCTCACAGGCAAGACCATCACTTTGGAGGTCGAGCCTTCCGAT 906904 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| ||||||||||| || || ||||| Sbjct 906903 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGATCAGCAG 906844 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || |||||| | ||||| |||| || ||| || Sbjct 906843 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAACATC 906784 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 906783 CAGAAGGAGTCCACTTTGCAT 906763 Score = 141 bits (156), Expect = 2e-28 Identities = 154/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || ||||| | ||||| || || || Sbjct 907419 CAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 907360 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || ||||| || || || ||||| Sbjct 907359 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 907300 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||||||||| ||||| ||||||||| | || |||| ||||||||||| | Sbjct 907299 CGTTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTAC-CTTGTCCGATTATAACAT 907241 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 ||| || || || || ||||| Sbjct 907240 CCAGAAGGAGTCCACTTTGCAT 907219 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || ||||| | ||||| || || || Sbjct 907191 CAGATCTTCGTTAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 907132 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || |||||||| || || ||||| Sbjct 907131 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 907072 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||||||||| ||||| || |||||| | ||||| |||| || ||| || Sbjct 907071 CGTTTGATTTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAACATC 907012 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || || ||||| | ||| || Sbjct 907011 CAAAAGGAGTCCACTTTGCATTTGGTTCTG 906982 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||| | || || || || ||||| | ||||| || || || Sbjct 907647 CAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAT 907588 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || ||||| || || || ||||| Sbjct 907587 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 907528 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||||||||| ||||| || || ||| | ||| | ||||||||||| || Sbjct 907527 CGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTATAACATC 907468 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 907467 CAGAAGGAATCGACCCTTCA-CTTG 907444 >seq4488 Length=533506 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| ||||| || || || |||||| | |||||||| || ||| Sbjct 135308 CAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAC 135367 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||||||||| || || || || || || ||||| Sbjct 135368 ACCATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 135427 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || | || || ||| || Sbjct 135428 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAACATC 135487 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 135488 CAGAAGGAGTCGACCCTCCATCTGGT 135513 >seq5214 Length=3698012 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 3522971 CAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 3523030 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 3523031 ACTATCGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 3523090 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | || |||||| | Sbjct 3523091 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATT 3523150 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 3523151 CAGAAGGAGTCCACTTTGCA-CTTG 3523174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203647469586226