Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5122 134 1e-26 seq5124 105 7e-18 >seq5122 Length=22589142 Score = 134 bits (148), Expect = 1e-26 Identities = 354/535 (66%), Gaps = 8/535 (1%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| || || ||||| || || |||||||| | |||||| ||||| || Sbjct 17925687 AACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAG 17925628 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||| || ||||| || || ||||| | ||| || || | || || || Sbjct 17925627 AAGGTCAGTCCAGGCATTAGACCGCGCTTCTTAAGCCAGAAAATGGATGCAAAGCTGCCG 17925568 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTC 17133 ||||| || ||||| |||| ||||| ||||| | || || || | | || | | Sbjct 17925567 CTGAAGAAGATGCCCTCCACGGCGGCAAAGGCGATGATACGCTCCCCGAAATTGGCAGAC 17925508 Query 17134 TTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGT 17190 || | | || ||||| | | |||| || || || |||||| || | |||||| Sbjct 17925507 TTGG--AGGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTTA--CAGCCGGCATCGT 17925452 Query 17191 TTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAG 17250 ||| || || || || | | ||| | | | || || || || ||||| || Sbjct 17925451 TTCGATAGCGTTGAACAGGTACTCGCGCTGGTTCGGATCCCGGATGTAAGTGTCGATCAG 17925392 Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310 | |||||||| || ||||| | |||||||||||| ||||| || ||||| ||||| || Sbjct 17925391 CACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCG 17925332 Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370 || |||| | || || ||| ||| || ||| | ||||| ||||| |||||||| Sbjct 17925331 TGCCTCCGTGACCTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCGTTTACGATGCC 17925272 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAG 17430 ||| |||||||| || |||| | ||| ||||||| ||||| | || Sbjct 17925271 ATCGGAGGCGGCGAAGAAAGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAG 17925212 Query 17431 AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAA 17485 | ||||||| | | || ||||| | |||||| || ||| |||||| ||| Sbjct 17925211 TCGGTGCCAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAA 17925157 >seq5124 Length=26641161 Score = 105 bits (116), Expect = 7e-18 Identities = 180/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || | ||| ||||| | | || ||||||||| | |||| |||| || Sbjct 18899921 TTCATGTACCGAACCTTGCCGAAAATAGCCCGCTCCTTCCACCCCATGTCATGGACGCCG 18899980 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | | ||| | ||| ||||| || ||||||||||| |||||| | ||| || || Sbjct 18899981 CCAATTGACCACATGCAGCCCACATAGCCGTTGGGATCGCGTCCATCCAGACTA-TACTT 18900039 Query 119902 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||||| | |||| | || | ||||| | || || || | |||||||||| | Sbjct 18900040 GTCGTTCAGCAAGATCGCGTACTCC-AACGCCCGCTCGGGGGTGGCAGTCCATTCCAGAA 18900098 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 | ||||| ||||||||||| || || | || |||||||| || || || |||| || | Sbjct 18900099 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAACTGCA 18900158 Query 120021 GTTGTGCGGCGTTCCA 120036 |||| || | |||||| Sbjct 18900159 GTTGCGCCGAGTTCCA 18900174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517512451204320