Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5124 114 1e-20 >seq5124 Length=26641161 Score = 114 bits (126), Expect = 1e-20 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || | ||| || || | | ||||||||||| | |||| |||| || Sbjct 18899921 TTCATGTACCGAACCTTGCCGAAAATAGCCCGCTCCTTCCACCCCATGTCATGGACGCCG 18899980 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | || ||| | || ||||| || ||||||||||| ||| || | ||| ||||| Sbjct 18899981 CCAATTGACCACATGCAGCCCACATAGCCGTTGGGATCGCGTCCATCCAGACTA-TACTT 18900039 Query 119055 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||||| | |||| | || | ||||| | || || || | |||||||||| | Sbjct 18900040 GTCGTTCAGCAAGATCGCGTACTCC-AACGCCCGCTCGGGGGTGGCAGTCCATTCCAGAA 18900098 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | ||||| ||||||||||| || ||| | ||||||||||| |||||| | || ||| | Sbjct 18900099 TCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAACTGCA 18900158 Query 119174 GTTGTGCGGTGTTCCATAG 119192 |||| || | |||||| || Sbjct 18900159 GTTGCGCCGAGTTCCACAG 18900177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511381643907680