Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq5124 100 2e-16 >seq5124 Length=26641161 Score = 100 bits (110), Expect = 2e-16 Identities = 283/427 (66%), Gaps = 7/427 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || ||||| | ||||||||||||||| |||| || || ||||| || | Sbjct 3014712 GGCGATCTGGGCCCGGTCTACGGCTTCCAGTGGCGACACTTCGGGGCGGAGTACGCCACC 3014653 Query 18849 TGTCAATCAAACTATTTACAGCAAGG-AATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || | |||| | |||||| |||||||||||||| || || || || || Sbjct 3014652 TGCGACGACGACTACAG-CGGCAAGGGAATCGATCAGCTGCGTCGGGTGATTGACACTAT 3014594 Query 18908 TAA-AACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 || || || ||| | | || || || || | ||| |||||||||| ||||| | Sbjct 3014593 CAAGAATAATCCCTCAGA-TCGGCGCATCATCTTGTCGGCTTGGAATCCTGTTGATATGC 3014535 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGT-TGCA--AACGGTG 19023 | ||||| || || || |||||| | ||||||| ||| | || ||||| Sbjct 3014534 CAAAGATGGTCCTGCCACCGTGTCACTGTCTGGCACAGTTTTTCGTCTCCACGCGCGGTG 3014475 Query 19024 AATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACA 19083 | |||| ||||| | |||||||| | || |||||||| || ||||| ||||| | Sbjct 3014474 AGCTATCGTGCCAGCTCTACCAGAGGAGTGCCGACATGGGCCTGGGCGTACCCTTCAATA 3014415 Query 19084 TTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAG 19143 | || || || || || |||||||| | || ||||| ||||| || || | || | Sbjct 3014414 TCGCCTCCTACGCCCTGCTCACCTACATGATCGCCCATGTGACAGGTCTGAAGCCGGGCG 3014355 Query 19144 ATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAG 19203 | || | || || ||||| || | || | ||| |||| ||| | || | | || | Sbjct 3014354 ACTTTGTCCACACCATGGGCGACACGCACGTCTACCTGAACCATGTCGAGCCGCTGAAGG 3014295 Query 19204 TGCAGCT 19210 |||||| Sbjct 3014294 AGCAGCT 3014288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399479051474580