Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5124 343 2e-89 >seq5124 Length=26641161 Score = 343 bits (380), Expect = 2e-89 Identities = 1204/1870 (64%), Gaps = 26/1870 (1%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10932362 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCC 10932421 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| ||||| |||| |||||| || || || ||||| ||| | || Sbjct 10932422 GGTTTTAAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCATAGTTGGG 10932481 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 ||||| | ||| || || | || ||||| ||||| ||||| || || | ||| || || Sbjct 10932482 CTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGTCGGCGGC 10932541 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 53036 |||||| || | | ||| || |||||||| | || || || | |||| | | Sbjct 10932542 CATTTTAATCGTGGACTTAACTGAGATTTCCCACACCGTCTTGTACAGATCGCGAACCCT 10932601 Query 53037 CTTCTGGAAGGTTTGTAT--TCTGAATAGATCCACCATCTACC-ATAATCCTATTCTTGA 53093 || ||| || | || | || || || || || || || ||| ||||| | Sbjct 10932602 CTGGGGGATGGCCTCAATGTTTTGGATTGAGCC-CCTGCTGGATATGATCTGGTTCTTCA 10932660 Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 53153 | || || | ||| || | ||| |||| | | | | ||| | || || || | Sbjct 10932661 TGTCGTCGTCCCACAAGTCCAGCTCTGTTAGGTCGCGCAACAAATGATGGTTGACCACCT 10932720 Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213 |||| || || |||| |||| || ||||| || || ||||||| || || | || | Sbjct 10932721 GAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATT 10932780 Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273 |||| || |||| |||||||| || |||||||| ||||| || || |||| | | Sbjct 10932781 CATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAACCAGCAGGGAGT 10932840 Query 53274 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 53333 | | | ||||| | |||| || || || | ||| | |||||| | || | Sbjct 10932841 TGCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTTG 10932900 Query 53334 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 53392 | || || | ||| || || || | | | ||| |||| Sbjct 10932901 GGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT-CATAG 10932959 Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452 || ||||| || ||||| ||| || |||||||| || || || || || || || ||| Sbjct 10932960 GTTTCGTAAGGGCCTTCGGTCTGGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAGTAA 10933019 Query 53453 ATGGTTTCGAAGATCTTCTTATTTA---GATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 ||||||||||| |||| || ||| | || | | |||| || ||| | || | Sbjct 10933020 ATGGTTTCGAATATCTGCTGATTCAACAGACCGGCTTCTTCA---CTTTCATACGGGAAT 10933076 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | |||||| || ||||| || ||||| |||| ||| || || | || | || ||| Sbjct 10933077 CGCATGAGAATCAAGGCGTCAGCGAATCCCTGAATACCTATGCCCACGGGACGGTGCCTC 10933136 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 ||| || | || ||||| | |||||||| || ||||| || || || || || Sbjct 10933137 AAATTTGACTTCCTTGCCTCTGGCAAGGGATAATAGTTGATATCAATTATCTTGTTTAGA 10933196 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATC 53685 |||||| || || ||| || ||||| || || |||||| | || ||| Sbjct 10933197 TTTCTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCCGG- 10933255 Query 53686 TATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 53745 | | ||||||||||| | ||||| ||||||| || || || |||| ||||| | | Sbjct 10933256 TGTGACAAACATGTTGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCCGGCGC 10933315 Query 53746 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 53805 | |||| | || || ||||| | || || ||||||||||| || | ||| || || Sbjct 10933316 GGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTG 10933375 Query 53806 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTG 53865 || ||||| |||| || || ||||| | || ||| | || | |||||||| | || Sbjct 10933376 GTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTG 10933435 Query 53866 GGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC 53925 | || || || || | ||| | | ||||||| | | ||| ||| | Sbjct 10933436 CGCCTCAATGATGGCATACCACAGGGATTGAGCCTTAACCGTTCGGTTG--GCTCGACCC 10933493 Query 53926 TCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||| |||||| ||||| ||| || || || ||||| |||| | | ||| Sbjct 10933494 TCTTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCA 10933553 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 || |||| | || ||||| | |||||| || |||| ||| ||| || ||||| ||| Sbjct 10933554 GGGCATTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGAAG 10933613 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 ||||| || ||||| ||||| ||| ||||| | || | || || || || || || Sbjct 10933614 AGATCGGGTATCCACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTG 10933673 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 || || || || ||||||||| | | | ||| || ||||| || |||| ||| |||| Sbjct 10933674 TTTTTCTTTAGTTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCA 10933733 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | | || || || ||| |||||||| || | || | || || || | || Sbjct 10933734 AAGGCACCGGGACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGAAGACC 10933793 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283 || | ||| |||| | |||||||| | || || || ||| | || || | || | Sbjct 10933794 CTGAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCGCAAATCGAGGTGCCCTTT 10933853 Query 54284 GCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 |||||||| | | | ||| || || || || || || || ||||| | |||| Sbjct 10933854 GCACGAATGCAATGCACGTTG--AGTCCAATGCCACCAGCAGACTTGGAGATCATGGCGC 10933911 Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401 | | | | | | | | |||||||| || || | ||||| | || || |||| Sbjct 10933912 ACTGCTCCACAGACTTAAAAATGCCCTCGATTGAGTCGGCAGTCATGGTCAGAAGGAAAC 10933971 Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 | |||| || | || | || | ||| ||| | || || || || ||||||| Sbjct 10933972 ACGACGACAGCTGCGGGCGGTTTGTGGCAGCAGCAAACAGCGTGGGCGATGCATGCGTAA 10934031 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521 | | || || || |||||||| || || | || | ||||||||| | ||| | Sbjct 10934032 AGTAGCGCTCCGATAGAAGATTGTAGGTTTCCACGGCCGCATCTATATCCTCTCCATGGA 10934091 Query 54522 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 54581 |||| | || || ||||| | ||| ||||| |||| || ||||||| |||| | | Sbjct 10934092 TTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTGTCT 10934151 Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641 | || | ||||| |||| ||| ||||| ||||||||||| || |||||| || | Sbjct 10934152 TGAGGAGATAGGAACGCTCCAGAGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGAT 10934211 Query 54642 CGTAAATAAT 54651 | || || || Sbjct 10934212 CATAGATTAT 10934221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593683572131520