Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5124 253 2e-62 >seq5124 Length=26641161 Score = 253 bits (280), Expect = 2e-62 Identities = 536/791 (68%), Gaps = 23/791 (3%) Strand=Plus/Plus Query 145589 CAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGG 145648 |||||||||| | ||||||||| ||||||| |||| | | | || | ||| ||| Sbjct 3014205 CAAAGTCCTCGAAGCGGAAGTCATCGATGTCCTGCACCTGACGCTTTATGTTCAGCTTGG 3014264 Query 145649 GAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGA 145708 ||||||| || || ||| ||||||| |||||| ||||| || ||||| ||||||| Sbjct 3014265 GAAAGGGTCGCGGTGTCCGCTTCAGCTGCTCCTTCAGCGGCTCGACATGGTTCAGGTAGA 3014324 Query 145709 CGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGA 145768 |||||| ||| |||| | ||||| ||||| || |||| || || || | ||||||| Sbjct 3014325 CGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCTGTCACATGGGCGA 3014384 Query 145769 CCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCC 145828 ||||||||| ||||||| |||| ||| || |||||||| || ||||| |||||||| Sbjct 3014385 TCATGTAGGTGAGCAGGGCGTAGGAGGCGATATTGAAGGGTACGCCCAGGCCCATGTCGG 3014444 Query 145829 CCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCC---GCCACGTAGAACTGGCACA 145885 | | |||||| |||||||| || ||||| |||| | | ||| | ||||| || Sbjct 3014445 CACTCCTCTGGTAGAGCTGGCACGATAGCTCACCGCGCGTGGAGACGAAAAACTGTGCCA 3014504 Query 145886 GGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945 | ||| || || |||||| |||| |||| || | || ||||| || | | || Sbjct 3014505 GACAGTGACACGGTGGCAGGACCATCTTTGGCATATCAACAGGATTCCAAGCCGACAAGA 3014564 Query 145946 CGAGCCTCCTGCTCT-CGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCC 146004 || | || | ||| ||| || ||||||| | |||| | ||||| || Sbjct 3014565 TGATGCGCC-GATCTGAGGGATTATTCTTGATAGTGTCAATCACCCGACGCAGCTGATCG 3014623 Query 146005 ACGCCCTGCCCCCGGTAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCA 146063 | |||| || | ||| || ||| | | || ||||| | ||||||||||| | ||| Sbjct 3014624 ATTCCCTTGCCGCTGTAGTC-GTCGTCGCAGGTGGCGTACTCCGCCCCGAAGTGTCGCCA 3014682 Query 146064 CTGGAACCCGTAGACGGGCCCCAGGTCCC---CGG---GCTCCCTGTGCCCCAGCCCGGC 146117 |||||| |||||||| || ||||| || | ||| ||||| | |||||| | | | Sbjct 3014683 CTGGAAGCCGTAGACCGGGCCCAGATCGCCAACGGAACGCTCCGTTAACCCCAGGCTGTC 3014742 Query 146118 CCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAG 146177 | ||||| || | | | ||| |||||||||| | ||| | |||| || Sbjct 3014743 C------AGGAACTCTCTGCTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGCCTGCAG 3014796 Query 146178 CTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCA 146237 | |||| |||||| ||| | |||||| |||||||| ||| || | | | Sbjct 3014797 CAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCTACTGCGCGGAA 3014856 Query 146238 GAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGC--CTGG 146295 ||| || | ||||||||||||||| || || |||||| | || || ||| Sbjct 3014857 GAACACACGCTTGGTGGTCAGCAGTGGAAAGGACTCCCGCATG--TTAAAGCGCATCTGA 3014914 Query 146296 TCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCACCCCGTTCGCC 146355 ||||| | |||||| |||||||| |||| | |||| || || | || || || Sbjct 3014915 CAACCGAACATGGACAGCGTGCCCACTTCCGTGCGGTCCATCCGCTGCTCTCCATTTGCG 3014974 Query 146356 AGGATCTCCCT 146366 ||||| || || Sbjct 3014975 AGGATTTCACT 3014985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590039005580960