Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq5124 111 3e-19 >seq5124 Length=26641161 Score = 111 bits (122), Expect = 3e-19 Identities = 185/265 (70%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 || |||||| || | ||| ||||| ||||| | || ||||||||||| | ||||| || Sbjct 18900177 CTGTGGAACTCGGCGCAACTGCAGTTGGTGCGCGAGGGAAAAATGCACGGCTTTTTGCGC 18900118 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTAT 189568 ||||| ||||| || ||||| || ||||||||| || || || || ||| || Sbjct 18900117 ATGTACTGGGCCAAAAAGATTCTGGAATGGACTGCCACCCCCGAGCGGGCGTTGGAGTAC 18900058 Query 189569 AGTATCTATTTGAACAACAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGG 189627 |||| ||||| ||||||| || || || ||| ||||| ||||| || || || Sbjct 18900057 GCGATCTTGCTGAACGACAAGTATAGTCTGGATGG-ACGCGATCCCAACGGCTATGTGGG 18899999 Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGG 189687 || |||||||| ||| |||| | || || | | |||||| || | | || || || Sbjct 18899998 CTGCATGTGGTCAATTGGCGGCGTCCATGACATGGGGTGGAAGGAGCGGGCTATTTTCGG 18899939 Query 189688 AAAGATAAGATATATGAATTATGAG 189712 ||| | | || ||||| ||| || Sbjct 18899938 CAAGGTTCGGTACATGAACTATCAG 18899914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923137669244960