Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5124 311 1e-79 >seq5124 Length=26641161 Score = 311 bits (344), Expect = 1e-79 Identities = 1194/1867 (64%), Gaps = 20/1867 (1%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10932362 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCC 10932421 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| |||| |||||| || || || ||||| ||| | || Sbjct 10932422 GGTTTTAAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCATAGTTGGG 10932481 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||| | ||| || || | || ||||| ||||| ||||| || || | ||| || || Sbjct 10932482 CTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGTCGGCGGC 10932541 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| || | | ||| || |||||||| | || || || | |||| | | Sbjct 10932542 CATTTTAATCGTGGACTTAACTGAGATTTCCCACACCGTCTTGTACAGATCGCGAACCCT 10932601 Query 62275 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTACC-ATAATCCTATTCTTGA 62331 || ||| || | || | || || || || || || || ||| ||||| | Sbjct 10932602 CTGGGGGATGGCCTCAATGTTTTGGATTGAGCC-CCTGCTGGATATGATCTGGTTCTTCA 10932660 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | || || | ||| || | ||| |||| | | | | ||| |||| || || | Sbjct 10932661 TGTCGTCGTCCCACAAGTCCAGCTCTGTTAGGTCGCGCAACAAATGATGGTTGACCACCT 10932720 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 | || || || |||| |||| || ||||| || || ||||||| || || | || | Sbjct 10932721 GAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATT 10932780 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 |||| || |||| |||||||| || |||||||| ||||| || || |||| | | Sbjct 10932781 CATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAACCAGCAGGGAGT 10932840 Query 62512 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACG 62571 | | | ||||| | |||| || || || | | ||| | |||||| | || | Sbjct 10932841 TGCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTTG 10932900 Query 62572 GTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 62630 | || || || | ||| || || || | | | ||| |||| Sbjct 10932901 GGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT-CATAG 10932959 Query 62631 GTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAA 62690 || || || || ||||| ||| || |||| ||| || || || || || || || ||| Sbjct 10932960 GTTTCGTAAGGGCCTTCGGTCTGGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAGTAA 10933019 Query 62691 ATGGTTTCAAAGATCTTCTTATTTA---GATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 |||||||| || |||| || ||| | || | | |||| || ||| | || | Sbjct 10933020 ATGGTTTCGAATATCTGCTGATTCAACAGACCGGCTTCTTCA---CTTTCATACGGGAAT 10933076 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | |||||| || ||||| || ||||| |||| ||| || || | || | || ||| Sbjct 10933077 CGCATGAGAATCAAGGCGTCAGCGAATCCCTGAATACCTATGCCCACGGGACGGTGCCTC 10933136 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 ||| || | || ||||| | |||||||| || ||||| || || || || ||| Sbjct 10933137 AAATTTGACTTCCTTGCCTCTGGCAAGGGATAATAGTTGATATCAATTATCTTGTTTAGA 10933196 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---T 62924 |||||| || || ||| || ||||| || || |||||| | | || | Sbjct 10933197 TTTCTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCCGGT 10933256 Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 | ||||||||||| | |||| ||||||| || || || |||| ||||| | | Sbjct 10933257 GTGACAAACATGTTGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCCGGCGCG 10933316 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | |||| | || || ||||| | || || |||||||| || || | ||| || || Sbjct 10933317 GAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGG 10933376 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || ||||| |||| || || ||||| | || ||| | ||| | |||||||| | || Sbjct 10933377 TTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGC 10933436 Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT 63164 | || || || || | ||| | | | ||||||| | | ||| || | ||| Sbjct 10933437 GCCTCAATGATGGCATACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCTCGACCCTCT 10933496 Query 63165 CTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 |||||| ||||| |||||| || || ||||| |||| | | | ||| Sbjct 10933497 TGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGG 10933556 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 |||| | || ||||| | |||||| || |||| ||| ||| || ||||| |||||| Sbjct 10933557 CATTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGAAGAGA 10933616 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 || || ||||| ||||| ||| ||||| | | | || || || || || || || Sbjct 10933617 TCGGGTATCCACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTGTTT 10933676 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 || || || ||||||||| | | | ||| || ||||| || |||| ||| ||||| | Sbjct 10933677 TTCTTTAGTTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAG 10933736 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 | || || || ||| |||||||| || | || | || || || | || || Sbjct 10933737 GCACCGGGACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGAAGACCCTG 10933796 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524 | ||| |||| | || || || | || || || ||| | || || || | ||| Sbjct 10933797 AGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCGCAAATCGAGGTGCCCTTTGCA 10933856 Query 63525 CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582 ||||| | | | ||| || || || || || || || ||||| | ||||| Sbjct 10933857 CGAATGCAATGCACGTTG--AGTCCAATGCCACCAGCAGACTTGGAGATCATGGCGCACT 10933914 Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63642 | | | | | | | ||||| || || || | ||||| | || || ||||| Sbjct 10933915 GCTCCACAGACTTAAAAATGCCCTCGATTGAGTCGGCAGTCATGGTCAGAAGGAAACACG 10933974 Query 63643 TAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63702 |||| || | || | || | ||| ||| | || || || || |||||||| Sbjct 10933975 ACGACAGCTGCGGGCGGTTTGTGGCAGCAGCAAACAGCGTGGGCGATGCATGCGTAAAGT 10934034 Query 63703 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63762 | || || || |||||||| || || | || | ||||||||| | ||| |||| Sbjct 10934035 AGCGCTCCGATAGAAGATTGTAGGTTTCCACGGCCGCATCTATATCCTCTCCATGGATTC 10934094 Query 63763 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCA 63822 | | || || ||||| | ||| ||||| |||| || | || || |||| | || | Sbjct 10934095 CGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTGTCTTGA 10934154 Query 63823 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63882 | ||||| |||| ||| ||||| ||||||||||| || |||||| || || | Sbjct 10934155 GGAGATAGGAACGCTCCAGAGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGATCAT 10934214 Query 63883 AAATAAT 63889 | || || Sbjct 10934215 AGATTAT 10934221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629777260182720