Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5123 123 2e-23 seq5124 111 2e-19 >seq5123 Length=25762168 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || ||||| |||||| | Sbjct 6600793 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6600852 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| || || ||| |||||||||| |||||||| || || Sbjct 6600853 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGG 6600912 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || |||||| || | | ||| | || |||| ||||||||| Sbjct 6600913 ATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACC 6600972 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| |||| || || ||||| ||||||||| Sbjct 6600973 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 6601020 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || ||||| |||||| | Sbjct 6599425 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6599484 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || || || || || | |||||||| |||||||| ||||| Sbjct 6599485 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGG 6599544 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || |||||| || | | ||| | || || | ||||||||| Sbjct 6599545 ATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCTGAAGGCTCCACC 6599604 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| |||| ||| || ||||| ||||||||| Sbjct 6599605 TCCAAAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATTTGCATA 6599652 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || ||||| |||||| | Sbjct 6600337 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6600396 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || || || ||||| | |||||||| |||||||| || || Sbjct 6600397 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGGGGG 6600456 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || |||||| || | | ||| | || |||| ||||||||| Sbjct 6600457 ATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACC 6600516 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| |||| || || ||||| ||||||||| Sbjct 6600517 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 6600564 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || ||||| |||||| | Sbjct 6599881 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6599940 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| || || ||| |||||||||| |||||||| ||||| Sbjct 6599941 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 6600000 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | || | | || | || || | ||||||||| Sbjct 6600001 ATTCCCTCCTTATCC-TGAATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCAC 6600059 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||| || ||||| || || ||||| || |||||| Sbjct 6600060 CTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTCACGAAGATCTGCATA 6600108 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || ||||| |||||| | Sbjct 6601021 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6601080 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| || || ||| |||||||||| |||||||| ||||| Sbjct 6601081 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 6601140 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | || | | || | || || | ||||||||| Sbjct 6601141 ATTCCCTCCTTATCC-TGAATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCAC 6601199 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| || || || || || ||||| Sbjct 6601200 CTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 6601247 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| |||||| | Sbjct 6598285 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 6598344 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || ||||||||||| || || | |||||||| |||||||| || || Sbjct 6598345 AAGGTGCGTCCA-TCCTCGAGCTGTTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGG 6598403 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||| | |||||||| Sbjct 6598404 GATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCAC 6598463 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | |||||||| |||| || || ||||| ||||||||| || Sbjct 6598464 TTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATACCT 6598515 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || |||||||| || Sbjct 6599653 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAA 6599712 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || |||||||| || || || | |||||||| |||||||| ||||| Sbjct 6599713 AGAGTGCGTCCA-TCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGG 6599771 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || || || || || ||| | || | || | || || || | |||| ||||||| Sbjct 6599772 AATTCCCTCCTTATCC-TGAATCTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCA 6599830 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | |||||||| |||| || || ||||| || |||||| Sbjct 6599831 CCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 6599880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | || ||||| || || |||||||| || Sbjct 6598741 CCACCACGCAGACGGAGAACCAAGTGCAAAGTGGACTCCTTCTGTATGTTATAGTCAGAA 6598800 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || |||||||| || || || | |||||||| |||||||| || || Sbjct 6598801 AGAGTGCGTCCA-TCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGG 6598859 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | || | | || | ||||| | ||||||| Sbjct 6598860 GATTCCCTCCTTGTCT-TGAATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCA 6598918 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | |||||||| |||| || || ||||| ||||||||| Sbjct 6598919 CCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 6598968 >seq5124 Length=26641161 Score = 111 bits (122), Expect = 2e-19 Identities = 495/774 (64%), Gaps = 25/774 (3%) Strand=Plus/Plus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 |||||| |||||| || ||||||||||| || || | || || || ||| | |||| | Sbjct 10933267 TGTTGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCCGGCGCGGAGTATTCAA 10933326 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 | ||||||| ||||| |||||||| || || ||| ||| || ||||| || | Sbjct 10933327 CGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCC 10933386 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 ||| |||||||||||| | |||||||| || | || ||||| |||| || || | Sbjct 10933387 TGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGA 10933446 Query 153805 TAGTACGCATCAATGTGACCGCGGGCATT---TGATCGCGAAACT-GGCCCTTGTCTTCG 153860 | | | | || | || | || || | ||| || | |||| | ||| Sbjct 10933447 TGG--CATACCACAGGGA--TTGAGCCTTAACCGTTCGGTTGGCTCGACCCTCTTGCTCG 10933502 Query 153861 TAGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCG 153920 || | | ||| | ||| || ||||| || || || | || | || |||| | Sbjct 10933503 TATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTG 10933562 Query 153921 TTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGA 153980 | ||| ||||| || ||||| || || | | ||||| ||| || | |||||| Sbjct 10933563 TGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGAAGAGATCGGGT 10933622 Query 153981 ACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGC 154040 | ||| || |||| | ||| ||||| || | ||||| |||| ||||| Sbjct 10933623 ATCCACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTGTTTTTCTTT 10933682 Query 154041 ATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCT 154100 | | | || || | | || | ||||| || |||| ||||| || || || Sbjct 10933683 AGTTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCG 10933742 Query 154101 TTACGCTTGCCG---CCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATG 154157 |||||||||| ||||| | || | |||| ||| ||||||||| |||| |||||| Sbjct 10933743 GGACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGAAGACCCTGAGCATG 10933802 Query 154158 GGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTG----TTGCGGCCTCG 154213 || | || || ||| || |||||||| |||| | || ||| | || Sbjct 10933803 GGAACCAACCCATTGGACGTTCCGTTTGTGCCGCAAATCGAGGTGCCCTTTG----CACG 10933858 Query 154214 AACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTT 154273 || || | ||||| | |||||| || || | ||||||||||||||||| | | Sbjct 10933859 AATGCAATGCACGTTGAGTCCAATGCCACCAGCAGACTTGGAGATCATGGCGCACTGCTC 10933918 Query 154274 CAATGTGTTATAGAT-ACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAAC 154332 || | ||| | || || ||| || ||| |||||||| |||||||| || Sbjct 10933919 CACAGACTTAAAAATGCCCTCGATTG-AGTCGGCAGTCATGGTCAGAAGGAAACACGACG 10933977 Query 154333 TCATCTGCGG--AGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGT 154384 || |||||| ||| ||| | |||||||||| || || ||| ||||| Sbjct 10933978 ACAGCTGCGGGCGGTT--TGTGGCAGCAGCAAACAGCGTGGGCGATGCATGCGT 10934029 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||||| || ||||||||||| || | |||| Sbjct 11019400 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGACCA 11019341 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 11019340 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 11019281 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | || || | || || ||||||| || | Sbjct 11019280 TC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGAT 11019222 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 11019221 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11019186 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| || |||| ||| || Sbjct 4301700 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCCTCC 4301641 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||||||||| |||||||| || || ||||| || || || | Sbjct 4301640 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 4301581 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | ||||||||||| | ||| | |||||| Sbjct 4301580 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 4301521 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| ||||| |||||||| Sbjct 4301520 CCGGTGAGGGTTTTCACGAAGATTTGCAT 4301492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496032227100800