Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5124 392 5e-104 seq5122 181 2e-40 >seq5124 Length=26641161 Score = 392 bits (434), Expect = 5e-104 Identities = 1221/1875 (65%), Gaps = 24/1875 (1%) Strand=Plus/Plus Query 78702 CTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTA 78761 ||| | ||||| || ||||| ||||||| | | || || || || || |||||||| Sbjct 10932356 CTTCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTA 10932415 Query 78762 CATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATA 78821 |||||| ||||| ||||| |||| ||| || || || || ||||| ||| Sbjct 10932416 CATTCCGGTTTTAAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCATA 10932475 Query 78822 ACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTC 78881 | || ||||| | ||| || || | || ||||| ||||| ||||| || || | ||| Sbjct 10932476 GTTGGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGTC 10932535 Query 78882 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCT 78940 || |||||||| || | | ||| || |||||||| | || || || | |||| Sbjct 10932536 GGCGGCCATTTTAATCGTGGACTTAACTGAGATTTCCCACACCGTCTTGTACAGATCGCG 10932595 Query 78941 TAATATCTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCC-ATAATCCTAT 78997 | ||| ||| || | || | || || || || || ||| || ||| | Sbjct 10932596 AACCCTCTGGGGGATGGCCTCAATGTTTTGGATTGAGCC-CCTGCTGGATATGATCTGGT 10932654 Query 78998 TCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 79057 |||| || || || | ||| || | ||| |||| | | | | ||| | || | Sbjct 10932655 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCTGTTAGGTCGCGCAACAAATGATGGTTGA 10932714 Query 79058 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCA 79117 | || ||||| || || |||| |||| || ||||| || || ||||||| || || | Sbjct 10932715 CCACCTGAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGA 10932774 Query 79118 CCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATA 79177 |||||||| || |||| |||||||| || ||||| || ||||| || || |||| | Sbjct 10932775 AGGATTCATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAACCAGCA 10932834 Query 79178 AACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGAT 79237 || | | ||||| |||| || || || | ||| |||||||| | Sbjct 10932835 GGGAGTTGCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGT 10932894 Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCT 79296 | ||||| | ||| | || || || | ||| || || || | || ||| Sbjct 10932895 TCGTTGGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT 10932954 Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 || ||||| ||||| ||||| | | ||| | |||||| || || || || ||||| Sbjct 10932955 CA-TAGGTTTCGTAAGGGCCTTCGGTCTGGGCCAGTTCACAGCTGGCTTCCAAGGCTCCA 10933013 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGA---GATCTTGTGCTTCTAGGCTATCAAAT 79413 || |||||||||||||| |||| || ||| | || | |||||| || ||| | Sbjct 10933014 TAGTAAATGGTTTCGAATATCTGCTGATTCAACAGACCG---GCTTCTTCACTTTCATAC 10933070 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 || | | |||||| || ||||| || ||||| |||| ||| || || | || | Sbjct 10933071 GGGAATCGCATGAGAATCAAGGCGTCAGCGAATCCCTGAATACCTATGCCCACGGGACGG 10933130 Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 || ||| ||| || | || ||||| | |||||||| || ||||| || || || Sbjct 10933131 TGCCTCAAATTTGACTTCCTTGCCTCTGGCAAGGGATAATAGTTGATATCAATTATCTTG 10933190 Query 79534 TTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCGTC 79591 || ||||| ||| | || ||| || ||||| || || |||||| | || || Sbjct 10933191 TTTAGATTTCTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTC 10933250 Query 79592 -CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650 | | | ||||||||||| | || | ||||||| || || || |||| ||||| Sbjct 10933251 TCCGGTGTGACAAACATGTTGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCC 10933310 Query 79651 GCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | | | |||| | ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 10933311 GGCGCGGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTC 10933370 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 || || || ||||| |||| || || ||||| | || ||| ||||| | |||||||| Sbjct 10933371 TGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCC 10933430 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTC 79830 | || | || || || || | ||| | | | ||||||| | | ||| ||| Sbjct 10933431 ACTTGCGCCTCAATGATGGCATACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CTC 10933488 Query 79831 TTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTA 79888 ||||| ||||||| ||| | |||||| || || ||||| ||||| | | Sbjct 10933489 GACCCTCTTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGA 10933548 Query 79889 ATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCA 79948 ||||| |||| || || ||||| | |||||| || || | ||| || || |||| Sbjct 10933549 GGCCAGGGCATTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCA 10933608 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 | |||||||| || ||||| ||||| ||| ||||| | || | || ||| || || | Sbjct 10933609 TGAAGAGATCGGGTATCCACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGC 10933668 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | || || || || || ||||||||| | | | ||| || ||||| || |||| ||| | Sbjct 10933669 CCGTGTTTTTCTTTAGTTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAA 10933728 Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 |||| | | || || || ||| |||||||| || | || | || || || Sbjct 10933729 TGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGA 10933788 Query 80129 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 80188 | || || | ||| |||| | |||||||| || || || || ||| | || || | | Sbjct 10933789 AGACCCTGAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCGCAAATCGAGGTGC 10933848 Query 80189 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 | | |||||||| | | | |||| | || || || || || || ||||| | Sbjct 10933849 CCTTTGCACGAATGCAATGCACGTTGA--GTCCAATGCCACCAGCAGACTTGGAGATCAT 10933906 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 ||||| | | | | | | | |||||||| || || || ||||| | || || Sbjct 10933907 GGCGCACTGCTCCACAGACTTAAAAATGCCCTCGATTGAGTCGGCAGTCATGGTCAGAAG 10933966 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 ||||| |||| || | || | || | ||| ||| | || || || || || Sbjct 10933967 GAAACACGACGACAGCTGCGGGCGGTTTGTGGCAGCAGCAAACAGCGTGGGCGATGCATG 10934026 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 80426 |||||| | || || || |||||||| || || | || | ||||||||| | Sbjct 10934027 CGTAAAGTAGCGCTCCGATAGAAGATTGTAGGTTTCCACGGCCGCATCTATATCCTCTCC 10934086 Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486 ||| ||||| | ||| || ||||| | ||| ||||| |||| || ||||||| || Sbjct 10934087 ATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTT 10934146 Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 | | || | | || || |||| ||| ||||| ||||||||||| || |||||| Sbjct 10934147 TGTCTTGAGGAGATAGGAACGCTCCAGAGTCTTAAAGCCAAAATAGTTATAGCCAAAGTC 10934206 Query 80547 TCGTTCGTAAATAAT 80561 || || || || || Sbjct 10934207 ACGATCATAGATTAT 10934221 >seq5122 Length=22589142 Score = 181 bits (200), Expect = 2e-40 Identities = 545/837 (65%), Gaps = 7/837 (1%) Strand=Plus/Minus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 |||||||| ||||| || |||| || || ||||| || || ||||| |||| Sbjct 17925978 ACTCCCATGCGCTGGTACTCTGCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 17925919 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 || || | |||||||| | || || || | || || || || || ||||| Sbjct 17925918 GAGATCATCTCCATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAAC 17925859 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || || ||| | ||||| || || ||||| || ||||| ||||||||||| Sbjct 17925858 TCCACAAGCAAACGGTCCGCAACGAACTCTATGTACTGGGACATCAGGTCACAATTCATG 17925799 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || | ||||| || || || | || || || || || ||||| | ||||| || Sbjct 17925798 CCGATTAAATTAACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATCGCCACCGCGTCA 17925739 Query 49900 GTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 49959 || || | | | || | | ||| | |||| | || | ||||||| Sbjct 17925738 CGGATGATCTCGATGATGCGCTCGTGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGC 17925679 Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || |||||||||| |||||||| | | || || |||||||| || || ||| Sbjct 17925678 ACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGT 17925619 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGA 50077 || |||||||| || ||||| |||||||| || ||||| ||||| || | | ||| || Sbjct 17925618 CCAGGCATTAGACCGCGCTTCTTAAGCCAGAAAATGGATGCAAAGCTGCCGCTGAA--GA 17925561 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GCTGTCATG 50135 |||| || || || ||||||||||| | | | ||| || || |||| || | | Sbjct 17925560 AGATGCCCTCCACGGCGGCAAAGGCGATGATACGCTCCCCGAAATTGGCAGACTTGGAGG 17925501 Query 50136 -TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | ||||| || ||||| |||||| ||||||||||| || || | Sbjct 17925500 AGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATCGTTTCGATAGCGT 17925441 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 | || || || | | || ||| | ||||| ||||||| | ||| |||| Sbjct 17925440 TGAACAGGTACTCGCGCTGGTTCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACA 17925381 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | ||||| || | ||| || ||||| ||||| || |||||||| || | ||||| || | Sbjct 17925380 TCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGA 17925321 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 |||||| || || || || || | | ||| || || || || || || ||| | Sbjct 17925320 CCTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGG 17925261 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 | || || |||| || || || ||||| |||| | | ||| | ||| | Sbjct 17925260 CGAAGAAAGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGTCGGTGCCAGT 17925201 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 || | | || || || | ||| || || || || ||||| || || || || |||| Sbjct 17925200 CAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGCTTCAGCCT 17925144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718222794883360