Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5123 89.7 4e-13 seq1295 89.7 4e-13 seq5121 84.2 2e-11 >seq5123 Length=25762168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | |||||| || | |||| |||||| || | |||||||||||| Sbjct 6598285 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 6598344 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || || | ||||||||||| ||||||| ||||| ||||| | || Sbjct 6598345 AAGGTGCGTCCATCCTCGAGCTGTTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGG 6598404 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 6598405 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACT 6598464 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || |||||||| Sbjct 6598465 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6598511 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 6598513 CCTCCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6598572 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| |||| ||| |||||||| ||||||| ||||| ||||| | || Sbjct 6598573 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGG 6598632 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 6598633 ATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACT 6598692 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || || ||||| Sbjct 6598693 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6598739 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 6599425 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6599484 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| |||| ||| |||||||| ||||||| ||||| ||||| | || Sbjct 6599485 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGG 6599544 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || || ||| || Sbjct 6599545 ATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCTGAAGGCTCCACC 6599604 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || |||||||| Sbjct 6599605 TCCAAAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATTTGCAT 6599651 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 6600109 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6600168 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| |||| ||| |||||||| ||||||| ||||| ||||| | || Sbjct 6600169 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGG 6600228 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| ||||| | ||| || Sbjct 6600229 ATTCCCTCCTTATCTTGGATTTTGGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACT 6600288 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || |||||||| Sbjct 6600289 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6600335 >seq1295 Length=1233 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 375 CCTCCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 434 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| |||| ||| |||||||| ||||||| ||||| ||||| | || Sbjct 435 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGG 494 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 495 ATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACT 554 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || || ||||| Sbjct 555 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 601 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 831 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 890 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| ||| |||||||| ||||||| ||||| ||||| | || Sbjct 891 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGG 950 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 951 ATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACT 1010 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || |||||||| Sbjct 1011 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1057 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 148 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 207 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 || || ||| |||| |||| ||| |||||||| ||||||| ||||| ||||| Sbjct 208 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATC 260 >seq5121 Length=18748788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| || | ||| |||||| || | ||||| ||||| Sbjct 15143752 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 15143811 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| |||| |||| || || ||||| || ||||| ||||| ||||| | || Sbjct 15143812 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 15143871 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | || ||| | ||| || Sbjct 15143872 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 15143931 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || ||||| || || ||||||||||| || Sbjct 15143932 CTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTTACGAAAATTTGCATATT 15143982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381345783945192