Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5124 360 3e-94 seq5122 158 2e-33 >seq5124 Length=26641161 Score = 360 bits (398), Expect = 3e-94 Identities = 1207/1870 (65%), Gaps = 26/1870 (1%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGC 70849 ||||| || || |||||||||| | | || |||||| || || ||||||||||| | Sbjct 10932362 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTT-GTGCGCAGATAGTACATTC 10932420 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | ||||| ||||| |||| |||||| || || || ||||| |||| | | Sbjct 10932421 CGGTTTTAAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCATAGTTGG 10932480 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | || || | ||||| || | ||||||||| ||||| ||||| || || | ||| || | Sbjct 10932481 GCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGTCGGCGG 10932540 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 71028 ||||||| || | | ||| || |||||||| | || || || | |||| | Sbjct 10932541 CCATTTTAATCGTGGACTTAACTGAGATTTCCCACACCGTCTTGTACAGATCGCGAACCC 10932600 Query 71029 TCTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCA-ATAATCCTATTTTTG 71085 ||| ||| || | || | || || || || || ||| | || ||| || || Sbjct 10932601 TCTGGGGGATGGCCTCAATGTTTTGGATTGAGCC-CCTGCTGGATATGATCTGGTTCTTC 10932659 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || || || | ||| || | ||| |||| | | | | |||| | || || || Sbjct 10932660 ATGTCGTCGTCCCACAAGTCCAGCTCTGTTAGGTCGCGCAACAAATGATGGTTGACCACC 10932719 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 ||||| || || |||| |||| | ||||| || || ||||||| || || | || Sbjct 10932720 TGAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGAT 10932779 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 ||||| || |||| |||||||| || |||||||| ||||| || || |||| || Sbjct 10932780 TCATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAACCAGCAGGGAG 10932839 Query 71266 TTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGAT 71325 || | | ||| || ||| || || || | ||| | |||||| | || | Sbjct 10932840 TTGCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTT 10932899 Query 71326 GGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCATA 71384 || || || || || || | || ||| |||| Sbjct 10932900 GGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT-CATA 10932958 Query 71385 TGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATA 71444 || ||||| || ||||| | | ||| |||||||| || || || || |||||||| || Sbjct 10932959 GGTTTCGTAAGGGCCTTCGGTCTGGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAGTA 10933018 Query 71445 AATGGTTTCGAAAATCTTCTTATTGA---GATCTTGTGCTTCCGGGCTATCAAATGGATA 71501 |||||||||||| |||| || ||| | || | | |||| || ||| | || | Sbjct 10933019 AATGGTTTCGAATATCTGCTGATTCAACAGACCGGCTTCTTCA---CTTTCATACGGGAA 10933075 Query 71502 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCT 71561 | |||||| || ||||| || ||||| |||| || || || | || | ||| || Sbjct 10933076 TCGCATGAGAATCAAGGCGTCAGCGAATCCCTGAATACCTATGCCCACGGGACGGTGCCT 10933135 Query 71562 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 71621 | ||| || | || ||||| | |||||||| || ||||| || || || || || Sbjct 10933136 CAAATTTGACTTCCTTGCCTCTGGCAAGGGATAATAGTTGATATCAATTATCTTGTTTAG 10933195 Query 71622 ATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC--- 71678 ||||||| | || ||| || ||||| || || |||||| | || || Sbjct 10933196 ATTTCTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCCGG 10933255 Query 71679 TATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 71738 | | ||||||| ||| | ||||| ||||||| || || || |||| ||||| | | Sbjct 10933256 TGTGACAAACATGTTGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCCGGCGC 10933315 Query 71739 GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 71798 || |||| | ||||| ||||| | || || ||||||||||| || | ||| || || Sbjct 10933316 GGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTG 10933375 Query 71799 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTG 71858 || ||||| |||| || || ||||| | || || ||||| | |||||||| | || Sbjct 10933376 GTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTG 10933435 Query 71859 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC 71918 | || || || || | ||| | | | ||||||| | | ||| ||| | Sbjct 10933436 CGCCTCAATGATGGCATACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CTCGACCC 10933493 Query 71919 TCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 |||| ||||||| ||| | |||||| || || ||||| ||| | | ||| Sbjct 10933494 TCTTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCA 10933553 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 || |||| | || ||||| | ||||| || || | | | || || ||||| ||| Sbjct 10933554 GGGCATTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGAAG 10933613 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 ||||| || ||||| ||||| ||| ||||| | || | || ||| || || || || Sbjct 10933614 AGATCGGGTATCCACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTG 10933673 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 || || || || ||||||||| | | | ||| || ||||| || |||| ||| ||||| Sbjct 10933674 TTTTTCTTTAGTTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCA 10933733 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | || || || ||| |||||||| || | || | || || || | || Sbjct 10933734 AAGGCACCGGGACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGAAGACC 10933793 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 || | ||| |||| | |||||||| | || || || ||| | || || | || | Sbjct 10933794 CTGAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCGCAAATCGAGGTGCCCTTT 10933853 Query 72277 GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 |||||||| | ||| |||| | || || || || || || ||||| | |||| Sbjct 10933854 GCACGAATGCAATGCACGTTGA--GTCCAATGCCACCAGCAGACTTGGAGATCATGGCGC 10933911 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 | | | | | | | | |||||||| || || | ||||| | || || |||| Sbjct 10933912 ACTGCTCCACAGACTTAAAAATGCCCTCGATTGAGTCGGCAGTCATGGTCAGAAGGAAAC 10933971 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 | |||| || | || | || | ||| ||| | || || || || ||||||| Sbjct 10933972 ACGACGACAGCTGCGGGCGGTTTGTGGCAGCAGCAAACAGCGTGGGCGATGCATGCGTAA 10934031 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 | | || || || |||||||| || || | || | ||||||||| | ||| | Sbjct 10934032 AGTAGCGCTCCGATAGAAGATTGTAGGTTTCCACGGCCGCATCTATATCCTCTCCATGGA 10934091 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 |||| | ||| || ||||| | ||||||||| |||| || ||||||| ||| | | Sbjct 10934092 TTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTGTCT 10934151 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 | | | ||||| |||| ||| ||||| ||||||||||| || |||||| || | Sbjct 10934152 TGAGGAGATAGGAACGCTCCAGAGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGAT 10934211 Query 72635 CGTAAATAAT 72644 | || || || Sbjct 10934212 CATAGATTAT 10934221 >seq5122 Length=22589142 Score = 158 bits (174), Expect = 2e-33 Identities = 477/734 (65%), Gaps = 11/734 (1%) Strand=Plus/Minus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 |||||||| ||||| || |||| || || ||||| || |||||||| |||| Sbjct 17925978 ACTCCCATGCGCTGGTACTCTGCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 17925919 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || | |||||||| | || || || | || || || || || ||||| Sbjct 17925918 GAGATCATCTCCATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAAC 17925859 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 || || ||| | || || | ||| ||||| || ||||| ||||||||||| Sbjct 17925858 TCCACAAGCAAACGGTCCGCAACGAACTCTATGTACTGGGACATCAGGTCACAATTCATG 17925799 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || || | ||||| || || || | || || || || || ||||| | |||||||| Sbjct 17925798 CCGATTAAATTAACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATCGCCACCGCGTCA 17925739 Query 42005 GTTATAATAGATCTTACTGTT----TCTTCACTCGGTGGATACAATAAATGTTTAAACAT 42060 || ||||| || | || | | ||| | | || | || | ||||| Sbjct 17925738 CGGAT----GATCTCGATGATGCGCTCGTGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 17925683 Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || || || |||||||||| ||||| || | | || | |||||||| || || Sbjct 17925682 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGT 17925623 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 ||||| |||||||| || ||||| |||||||| || || || ||||| || || Sbjct 17925622 CAGTCCAGGCATTAGACCGCGCTTCTTAAGCCAGAAAATGGATGCAAAGCTGCCGCTGAA 17925563 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCA 42238 |||||| || || || || |||||||| || | | ||| || || |||| || | Sbjct 17925562 GAAGATGCCCTCCACGGCGGCAAAGGCGATGATACGCTCCCCGAAATTGGCAGACTTGGA 17925503 Query 42239 TGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | ||||| | ||||| || ||||| |||||| ||||||||||| || || Sbjct 17925502 GGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATCGTTTCGATAGC 17925443 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 || || || || | | || ||| | || || ||||||| | ||| || Sbjct 17925442 GTTGAACAGGTACTCGCGCTGGTTCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTA 17925383 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || | ||| || ||||| ||||| || |||||||| || | ||||| || Sbjct 17925382 CATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCCGT 17925323 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || || || || || | | ||| ||||| || || || || ||| Sbjct 17925322 GACCTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCGTTTACGATGCCATCGGAGGC 17925263 Query 42478 TGCAAAAAACGCCA 42491 || || || |||| Sbjct 17925262 GGCGAAGAAAGCCA 17925249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671096213534240