Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5122 313 4e-80 seq5124 221 2e-52 seq5121 194 2e-44 >seq5122 Length=22589142 Score = 313 bits (346), Expect = 4e-80 Identities = 587/853 (69%), Gaps = 40/853 (5%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTAC-GAT 125096 ||||| | ||||| || ||||| ||||| ||||| ||| ||||||||||||| ||| || Sbjct 17925144 AGGCTGAAGCCTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCT-TACTGAC 17925202 Query 125097 TGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTT 125156 ||| | || ||| || ||||| | || || |||||| | |||| ||||| Sbjct 17925203 TGGCAC---CGACTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCTTTCTTC 17925259 Query 125157 GCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACC 125216 |||| ||||||||| ||||| ||||| |||||| || || ||| ||| ||| || Sbjct 17925260 GCCGCCTCCGATGGCATCGTAAACGAGAATCTGGTGGAGCGCTTCAGTCAGGAGGTGCAG 17925319 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 | | |||| ||||| ||||| ||||| ||| || ||||||||||||||||| Sbjct 17925320 GTCACGGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAG 17925379 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCG---CAACGTAAACACATGCTC 125333 |||||| | ||||| |||| ||||| || |||||| || || | || || Sbjct 17925380 ATGTACAGTGTGCTGATCGACACTTACATCCGGGATCCGAACCAGCGCGAGTAC---CTG 17925436 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCG 125389 || ||||| ||||| ||| ||||| || ||||| ||||| | |||| | Sbjct 17925437 TTCAACGCTATCGAAACGATGCCGGCT----GTAAAGCGCAAGGCAGACTGGGCCCTGTC 17925492 Query 125390 GTGGATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446 |||||| | ||||||| | | || || | | | || || |||||||| Sbjct 17925493 CTGGATC---TCCTCCAAGTCTGCCAATTTCGGGGAGCGTATCATCGCCTTTGCCGCCGT 17925549 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 |||||||||||||| || || ||||| |||| || ||||| ||||||||||| || Sbjct 17925550 GGAGGGCATCTTCTTCAGCGGCAGCTTTGCATCCATTTTCTGGCTTAAGAAGCGCGGTCT 17925609 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 ||||| |||||||| | |||||| |||| ||||| ||||||||| | ||||| || Sbjct 17925610 AATGCCTGGACTGACCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGA 17925669 Query 125567 CTTTGCCATTCTACTGTTTC-GCAACT--ATCTGCGTCCCGAGTGCAGATCCAGCGATGA 125623 ||||||| | || |||| | ||| || | ||| ||| | ||| | |||| Sbjct 17925670 CTTTGCCGTGCTGATGTTCCAGCACCTGGTGCAGCGACCCAA--GCA---CGAGCG---- 17925720 Query 125624 AAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATC 125683 ||||| | || | || || ||| ||| || || ||||| || ||||| | Sbjct 17925721 ---CATCATCGAGATCATCCGTGACGCGGTGGCGATTGAGCAGGAGTTCCTCACCGATGC 17925777 Query 125684 CCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGT 125743 ||| || || | | || |||||||| || | || |||| | ||||||||||||| || Sbjct 17925778 CCTGCCCGTTAATTTAATCGGCATGAATTGTGACCTGATGTCCCAGTACATAGAGTTCGT 17925837 Query 125744 GGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTT 125803 || || ||| | || |||||| | | ||||| |||||| ||||||| ||||| Sbjct 17925838 TGCGGACCGTTTGCTTGTGGAGTTGGGCGTTGGGAAGATCTACAACACCAAGAACCCCTT 17925897 Query 125804 TGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAG 125863 | |||||| | || || || || || |||||||||||||| ||||||||||| Sbjct 17925898 CAACTTCATGGAGATGATCTCGCTGGATGGAAAGACCAACTTTTTTGAGAAGAAGGTGGC 17925957 Query 125864 CGAGTACAAACGC 125876 |||||| | ||| Sbjct 17925958 AGAGTACCAGCGC 17925970 >seq5124 Length=26641161 Score = 221 bits (244), Expect = 2e-52 Identities = 953/1483 (64%), Gaps = 44/1483 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACG-CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CA 96863 |||||||| |||| ||| ||| | || || |||||||| | | ||| |||||| | Sbjct 10933831 ACAAACGG-AACGTCCAATGGGTTGGTTCCCATGCTCAGGGTCTTCAA--CAATGTGGCG 10933775 Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || || || ||||| ||| || || || || || | ||| | ||| |||| || Sbjct 10933774 CGTTATGTGGACCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAGCCC 10933715 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||| |||| || ||||| || |||| | |||||| | ||| |||||| Sbjct 10933714 TGGCACTCGGATGTCTTTGAGTTCCTCGAACTAAAGAAAAACACGGGCAAGGAAGAGAAT 10933655 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || ||| | || ||||||| || || ||| | || ||| | |||||||||||||| | Sbjct 10933654 CGCGCCCGCGATCTGTTTTACGCTCTGTGGATACCCGATCTCTTCATGAAGCGCGTGGAG 10933595 Query 97044 G---ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 | |||||| | ||| || ||||||||| || | || || || ||| Sbjct 10933594 GCCAACGGTG---ATTGGTCGCTCATGTGCCCCCACAAATGCCCTGGCCTCCAAGATGTG 10933538 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 |||||||| || || || ||| | |||||||||||||| ||| | || Sbjct 10933537 TGGGGCGATGAATTCGAAAAGCTGTATGAGAAATACGAGCAAGAGGGTCGAGCCAACCGA 10933478 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 || | || | | |||||| | |||||| | ||| || || || ||||||| | Sbjct 10933477 ACGGTTAAGGCTCAATCCCTGTGGTATGCCATCATTGAGGCGCAAGTGGAAACTGGAAAT 10933418 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 |||||||| |||| |||||| | || | || |||||||| | | | |||||| Sbjct 10933417 CCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTTGGCACC 10933358 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 |||||| || ||| ||||||||||||| || || ||| || | ||||| |||| || Sbjct 10933357 ATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCGCGCCGGATGAGATAGCT 10933298 Query 97341 GTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT---AGAGGGTAAAGTGTTTAAT 97397 || ||| ||||||| | || || |||||| | || || || | || Sbjct 10933297 GTCTGCAACTTGGCATCCATTGCCCTCAACATGTTTGTCACACCGGAGAAGACGTATGAT 10933238 Query 97398 CTCAACCTATTGGCAAAGACGGTGC--GTCTGGTGACTAGGAATCTAAACAAGATTATCG 97455 |||| | ||| || | | | || || || |||||||||||||| || | Sbjct 10933237 TTCAA--GAAGCTCAAGGAAGTCACCAAGATAGTTACCAGAAATCTAAACAAGATAATTG 10933180 Query 97456 ACAATGCACT-CTATCCCATTCCCTCGGCTGCCAAGTCAAACTTTAAGCACCGACCCATC 97514 | || ||| |||||| | || ||| |||||||| || | |||||| ||| | Sbjct 10933179 A-TATCAACTATTATCCCTTGCCAGAGGCAAGGAAGTCAAATTTGAGGCACCGTCCCGTG 10933121 Query 97515 GGTATAGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGCCTACG----- 97569 || ||||| | || || | ||| ||||| || | ||| | | | || | Sbjct 10933120 GGCATAGGTATTCAGGGATTCGCTGACGCCTTGATTCTCATGCGATTCCCGTATGAAAGT 10933061 Query 97570 --AGGACTCGATGCAGTTGAATCGTGACATTTTCGAAACCATCTACCATGCAGCACTGAC 97627 || | || | | |||||||| | || ||||||||||| ||| ||| ||| || Sbjct 10933060 GAAGAAGCCGGT-CTGTTGAATCAGCAGATATTCGAAACCATTTACTATGGAGCCTTGGA 10933002 Query 97628 GGAGAGTTGCCAACTGG-CCAGAGTGCACGGAGTCTACGAATCGTACCACGGTAGCCCGA 97686 | || || |||||| ||||| | | || |||||| | || | || |||||| Sbjct 10933001 AGCCAGCTGTGAACTGGCCCAGACCG-AAGGCCCTTACGAAACCTATGAGGGCAGCCCGG 10932943 Query 97687 CCAGTCGTGGAGAGTTGCACTTCGAC---CGATACTCGGTGCACAGCCAA-AAGTGTGAC 97742 || ||| ||||| | |||| | || ||| | || | || || ||| Sbjct 10932942 TGAGCAAGGGAATTTTGCAGTACGACATGTGGGACAAGGT-CCCAACGAACCTTTGGGAC 10932884 Query 97743 TGGTCATCGTTGCGCAAAGA---CATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTG 97799 ||| || | | || || ||| | ||||| | | ||||| ||||||| Sbjct 10932883 TGG-CA--GAAACTGAAGGAGTCCATCAAGAAGCACGGTGTCCGCAACTCCCTGCTGGTT 10932827 Query 97800 GCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCG 97859 || || |||||||| || | || | ||| | | ||||| |||||| || || || Sbjct 10932826 GCTCCAATGCCCACTGCATCTACAGCTCAAATAATGGGCAACAATGAATCCTTCGAGCCC 10932767 Query 97860 TTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTG 97919 | || | ||||| ||| || || | ||| || |||||||| || |||| Sbjct 10932766 TATACCACGAACATATACACCAGGCGAGTTCTGTCCGGCGAGTTTCAGGTGGTCAACCAT 10932707 Query 97920 CACTTGGTTCGAGACTTGGAACGGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATC 97979 || ||| | || ||| | | ||| | ||||| |||| |||||| | |||| Sbjct 10932706 CATTTGTTGCGCGACCTAACAGAGCTGGACTTGTGGGACGACGACATGAAGAACCAGATC 10932647 Query 97980 ATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGA-AGAGTTGCGCAGAAT 98038 || | || || || || || ||||||||| |||||| | || ||| ||| | Sbjct 10932646 ATATCCAGCAGGGGCTCAATCCAAAACATTGAGGCCATCCCCCAGAGGGTT-CGCGATCT 10932588 Query 98039 CTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || ||||| || | ||| | ||| | ||||| |||||| | || Sbjct 10932587 GTACAAGACGGTGTGGGAAATCTCAGTTAAGTCCACGATTAAAATGGCCGCCGACCGTGG 10932528 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || | ||| || |||||||| |||||||| | | || || ||||||| ||| | Sbjct 10932527 TGCGTTCATAGATCAGAGTCAGTCGTTCAACATTCATGTGGCAGAGCCCAACTATGGAAA 10932468 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 |||| || |||||||||||| | ||||| || || || || || ||||||||||| Sbjct 10932467 ACTGACCTCCATACACTTTTACTCCTGGAAAGCTGGTCTTAAAACCGGAATGTACTATCT 10932408 Query 98219 GAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 | | |||||| | || | |||||||| | || || ||| || Sbjct 10932407 GCGCACAAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAAC 10932365 Score = 192 bits (212), Expect = 9e-44 Identities = 321/459 (70%), Gaps = 9/459 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||||||||| || || ||||| ||||||||| | |||| || | |||| | | Sbjct 3014712 GGCGATCTGGGCCCGGTCTACGGCTTCCAGTGGCGACACTTCGGGGCGGAGTACGCCACC 3014653 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185 ||||| ||| ||||| || |||| | ||||| ||| | ||||||||| | Sbjct 3014652 TGCGACGAC-GACTACAGCGGCAAGGGAATCGATCAGCTGCGTCGGGTGATTGACACTAT 3014594 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 ||||| ||||| ||||| || | ||| | ||| | |||||||||| ||| ||| Sbjct 3014593 CAAGAATAATCCCTCAGATCGGCGCATCATCTTGTCGGCTTGGAATCCTGTTGATATGCC 3014534 Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT----ACGAT-GGC 70300 | |||| || ||||||||||||||| |||| ||||||| |||| ||| || Sbjct 3014533 AAAGATGGTCCTGCCACCGTGTCACTGTCTGGCACAGTTTT--TCGTCTCCACGCGCGGT 3014476 Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360 | | || ||| | || ||||||||||||||||||||||| || |||||||| || Sbjct 3014475 GAGCTATCGTGCCAGCTCTACCAGAGGAGTGCCGACATGGGCCTGGGCGTACCCTTCAAT 3014416 Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCAC 70420 || || ||| | || | || ||||||| || || | || || ||||| || | Sbjct 3014415 ATCGCCTCCTACGCCCTGCTCACCTACATGATCGCCCATGTGACAGGTCTGAAGCCGGGC 3014356 Query 70421 GAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAG 70480 || || || |||||||| |||||| | ||||| || | || || ||||||| | ||| Sbjct 3014355 GACTTTGTCCACACCATGGGCGACACGCACGTCTACCTGAACCATGTCGAGCCGCTGAAG 3014296 Query 70481 GTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 | ||| || | ||| ||| |||| |||||||||||| Sbjct 3014295 GAGCAGCTGAAGCGGACACCGCGACCCTTTCCCAAGCTG 3014257 >seq5121 Length=18748788 Score = 194 bits (214), Expect = 2e-44 Identities = 386/570 (68%), Gaps = 14/570 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| ||||| || || || | || ||||||||||| || |||||| Sbjct 3154941 TTGCGGAAGAAGATGACGCCGGCGCGCGGTCCGCGCAGCGTCTTGTGCGTGGTGGTGGTC 3155000 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| |||| || || || || | | | || | | |||||| | Sbjct 3155001 ACAATGTCGGCCCACTCGAACGGTGATGGTATCAGGCCGGCGGCCACAATGCCCGCCACA 3155060 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| ||| | | ||| |||| ||||| || Sbjct 3155061 TGGGCCATGTCGGCCATCAGGTAGGCGCCCACATCGTCGCATATCTGACGGAAACGGGCG 3155120 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| |||| | ||||| | ||||||| ||||| | || ||| Sbjct 3155121 TAGTCCAGCAGCCGGGAGTAGCACGAGATGCCGGCAATGATGATTTGCGGGCGGAAGTTC 3155180 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| ||| || | ||| | || |||| || || |||| || | ||| |||||| Sbjct 3155181 TTGGCCGCCTCCGCCAACTTGTCGTAATCGATGATGCCCGTCTCCGGGTTCACTTTGTAC 3155240 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| || | ||||| || || | || ||| ||| ||| Sbjct 3155241 GGCATGCTCTCGAAGAATATCGATGTGGCCGAGATTTTCTTGGTGGGCGTGAAGAAGCCG 3155300 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| |||||| || ||||||||||| || |||||||| | | |||| || | Sbjct 3155301 TGCGTCAAGTGGCCGCCATCGGGCAGATCCAGGCCCATGATGCGATCGTGGGGACGGCAG 3155360 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || ||||| || || | ||| || ||| || |||||||| || ||| || ||| Sbjct 3155361 ACGCCCGTGTAGACAGCCAGATTGCCCGGCGATCCGGAGTACGGCTGCACATTTACGCCC 3155420 Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || | | ||||| || ||||| |||| | | | || | ||| || ||||| || || Sbjct 3155421 CACTTCGCCTCGTCCAGGTTGAAGAGCTC-GCGTCCGCGTTTCTGGGCCAGCAGCTCTAT 3155479 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 ||||||||| ||||||| || || ||||| Sbjct 3155480 GCGATCGATGTACTCGTTGCCGCCGTAGTA 3155509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741011735158240