Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5123 105 5e-18 seq5121 104 2e-17 >seq5123 Length=25762168 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 6600354 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 6600413 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | |||| ||| || || || || ||||| || || || Sbjct 6600414 CAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCTTG 6600473 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || |||| ||||||||| | || || || || || ||||| || Sbjct 6600474 GATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTT 6600533 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||||||| Sbjct 6600534 GCCAGTCAGGGTCTTCACGAAGATTTGCATA 6600564 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| | | | ||||||| Sbjct 6599442 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 6599501 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || || || || ||||| || || || Sbjct 6599502 CAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTATCTTG 6599561 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || |||| |||||||| | || || || || || ||||| || Sbjct 6599562 GATTTTGGCCTTCACGTTTTCAATGGTATCTGAAGGCTCCACCTCCAAAGTGATGGTCTT 6599621 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||||||| Sbjct 6599622 GCCAGTCAGCGTCTTCACGAAGATTTGCATA 6599652 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 6600810 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 6600869 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||| || | |||| ||| || || || || ||||| || || || Sbjct 6600870 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCTTG 6600929 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || |||| ||||||||| | || || || || || ||||| || Sbjct 6600930 GATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTT 6600989 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||||||| Sbjct 6600990 GCCAGTCAGGGTCTTCACGAAGATTTGCATA 6601020 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| | | | ||||||| Sbjct 6600126 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 6600185 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || || || || ||||| || || || Sbjct 6600186 CAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTATCTTG 6600245 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTT 15332 |||||| ||| ||| | || || || || | || || || || | ||| ||||| | Sbjct 6600246 GATTTTGGCCTTCACATTCTCAATAGTGTC-CGATGGCTCCACTTCCAGGGTGATGGTCT 6600304 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| || || || || ||||||||| Sbjct 6600305 TGCCAGTCAGGGTCTTCACGAAGATTTGCATA 6600336 >seq5121 Length=18748788 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| ||| || | | |||| || Sbjct 15143771 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15143830 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||||||| || || || || ||||| || ||||| Sbjct 15143831 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15143890 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||||||| || || || ||||| ||||| || Sbjct 15143891 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 15143950 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||||||| ||||| |||||||||||||| Sbjct 15143951 CCAGTCAGAGTCTTTACGAAAATTTGCATATT 15143982 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || |||||||| ||| || | | |||| || Sbjct 15142402 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTC 15142461 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || || ||| | |||||||| || || || || ||||| || ||||| Sbjct 15142462 TAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 15142521 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| || | || ||||||||| || || || ||||| || || || Sbjct 15142522 GATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATAGTCTT 15142581 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| || ||||| Sbjct 15142582 GCCAGTGAGGGTCTTCACAAAGATCTGCAT 15142611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362156582361684