Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5123 96.9 3e-15 seq5120 89.7 4e-13 >seq5123 Length=25762168 Score = 96.9 bits (106), Expect = 3e-15 Identities = 225/333 (68%), Gaps = 11/333 (3%) Strand=Plus/Plus Query 20950 ATAATGCCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCT 21009 |||| ||||||||| | ||| | || | |||||| || |||||| ||| |||| | Sbjct 11111744 ATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCTGTTGACTTGCTCAGCTCGTGGCCA 11111803 Query 21010 GTTAAGCCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGC 21069 |||||| |||||| ||| | |||||| || | | | || || | ||||| | | Sbjct 11111804 CCCTTGCCGAGATCATCGGCATCGGCGTGCACAACAACGGTGCGTCCGATGATGCT-ATC 11111862 Query 21070 GGACCAAACAAGC-TCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCC 21128 || | | ||| | ||| | |||| | ||| ||| || | || || ||| Sbjct 11111863 GGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGCTGACCTTGGTGGG-GCAGTC--GCC 11111919 Query 21129 CGCGGAGCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTG 21188 | || | |||||||| |||||| | ||| || | || || ||||||||||||| Sbjct 11111920 GGTGGCCTCAATGTTGCCCAAATCGCCCAGGTGACGGTTCTCGTCGACGGGAGCGCCGTG 11111979 Query 21189 ATTTTGG---TGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTC 21245 | | | |||| | || |||||| |||| ||| ||||||||||| || |||| Sbjct 11111980 CTCCTTGCCATGCGGA---TTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTTGTC 11112036 Query 21246 GCCGAACTCGTGAACGTGAAAGCCGTGCAGTCC 21278 ||||||||||| ||||| || |||||||| || Sbjct 11112037 TCCGAACTCGTGCACGTGGAATCCGTGCAGACC 11112069 >seq5120 Length=17746568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 34554 CGCGTGCTGCTTATGTCCATCAAGTGCGGCGGCGTGGGACTGAACTTAACCGGCGGCAAT 34613 |||||||| || | ||| ||| ||||| ||||||||||| | | || | |||| Sbjct 3983649 CGCGTGCTCCTACTCTCCCTCACCGCTGGCGGTGTGGGACTGAATCTGAACGTGGCCAAT 3983590 Query 34614 CACATAATTATGTTGGAGCCCCACTGGAACCCGCAGATCGAACTGCAGGCGCAAGACCGC 34673 || || | || |||| | |||||||||||||||| | || | ||||| || |||||| Sbjct 3983589 CATATGCTAATTGTGGACCTCCACTGGAACCCGCAGCTGGAGCGACAGGCTCAGGACCGC 3983530 Query 34674 ATCCACCGCATGGGCCAAAAGAAGCGCACCTTCGTCTAC 34712 ||| | || || |||| |||| ||||||| ||||| Sbjct 3983529 ATCTATCGATATGGTCAAACTAAGCCCACCTTCATCTAC 3983491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414546910446856