Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq3473 2347 0.0 seq301 1656 0.0 >seq3473 Length=3319 Score = 2347 bits (2602), Expect = 0.0 Identities = 1384/1439 (96%), Gaps = 0/1439 (0%) Strand=Plus/Plus Query 31088 GGCCAGGCGTCGCCGCCGCTGGGTTTTGCTGCCCTGGAGGAACGCACCTGGACGGTCAGC 31147 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct 3 GGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCAGC 62 Query 31148 ATCGGCACCGACGGCCCGCCCGTGGTCAATGCACGGATCGTCTGGAGGCTCCTGGGCGAG 31207 || ||||| |||||||||||||| |||||||| ||||||||||||| ||||| ||||||| Sbjct 63 ATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCGAG 122 Query 31208 CCGGACCTGGTCCTGGTCATCACCGGCAATCGGATCATCGCCTGGACGTTCGCCCCGGAC 31267 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 123 CCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGGAC 182 Query 31268 TGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAATCA 31327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAATCA 242 Query 31328 GCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAGGCGAACATG 31387 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 243 GCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACATG 302 Query 31388 TACGCGGTGGACCGCGAGCGGCAGCTACTGGACATGACGCTGTTTGGCTGGGGCGCGCGC 31447 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 303 TACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGCGA 362 Query 31448 GTTTGGGCGCTGCCGATCTGGCCTGATATCCAGCTGCTCCAGGAACCGCTGGCGGCCGGC 31507 |||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| Sbjct 363 ATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCGGC 422 Query 31508 TCGCTGAACATTCCGTGCGACACGGCCGGCCTCGACTTCCGCGACGGCGGTCTGGCGATG 31567 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 423 TCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGATG 482 Query 31568 CTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCGCC 31627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 CTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCGCC 542 Query 31628 GGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGGAACTGGCTCGCGACTGTACCCG 31687 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 543 GGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACCCG 602 Query 31688 GTGCGCACCGCGCAGCTGACCGAACAGCCTACGCTGACCCGGCTGACCGATACCGCGCAG 31747 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 603 GTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGCAG 662 Query 31748 TCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGGCG 31807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 TCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGGCG 722 Query 31808 ACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCACCCGGACGAAAGCGAAGACCTGACG 31867 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 723 ACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCACC 782 Query 31868 TCGAGCTATCAGCGCCTGCTGTCCACCTTGGACAACGGCAGCGCGATTCCCCGCGTGACC 31927 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 783 TCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGACC 842 Query 31928 GACGTCGCCGGGATGGCGCTGCCGGTCATCGGCCATCGCTGGATCGGCATGGGCCGAGCC 31987 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 843 GACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAGCC 902 Query 31988 GAGCGGTCGGCGTTCCGTAGCCTGGTCTATGCACTGCGCGGCCAGCAGAAGCCGCTATGG 32047 ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 903 GAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTATGG 962 Query 32048 GTGCCGACCCACGCCGACGACCTGACCCTGGTCGCCACCGTCTCGCAACTGGCGACCGCG 32107 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | || ||| Sbjct 963 GTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTGCG 1022 Query 32108 CTGGATGTGCGCAATATCGGCTATGCCCGTTTCGCGAATGGTCGGCCGGGCCGTCGCGAC 32167 ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||| Sbjct 1023 CTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCGAT 1082 Query 32168 ATCCGTATCGAGCTGTACGACGGCACGGTCTATCACCGCCGCATCCTCACCAGCACCGAG 32227 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1083 ATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCGAG 1142 Query 32228 CTGGACGCCGACACCGAGCGTTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGCCG 32287 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1143 CTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGCCG 1202 Query 32288 ACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCACCGACGTGGTCGAG 32347 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1203 ACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCGAG 1262 Query 32348 ATAGAGCACGTCACCGATAGCGAGGGCGTCGCAACTGCCGCCCTGACGTTCAAAGGGGTT 32407 || |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 1263 ATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGGTT 1322 Query 32408 CGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTTGCGGATGGGCAGCCGGTGCGGCT 32467 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1323 CGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGGCT 1382 Query 32468 GTATCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCA 32526 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1383 GTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCA 1441 Score = 1260 bits (1396), Expect = 0.0 Identities = 754/785 (96%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 34904 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACTG 34963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 34964 GCC---GGCGTGATCGATCC-GGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCT-ACT 35018 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 35019 TGGCCGCGCTGGCC-GAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 35077 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 35078 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 35137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 35138 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 35197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 35198 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGATGAGATAGTCCGGGTC 35257 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 35258 GATGCAGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 35317 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 35318 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCGGTGGAC 35377 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 35378 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 35437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 35438 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTGACGCTGACCGGGCGCCAAGGT 35497 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 35498 AAGCCGTACCCGCCCGGCCAGTTCCGCATCAACGGTAGCGCGTACCCGGCGAAGGTCTAC 35557 |||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 35558 GGGGCGTTATCAGTGAACTGGGCGAAGCGCGACCGCATTGGCCAGGCCGACCAGCTGATC 35617 |||||| | || |||| |||||||||||||||||| || ||||||||||||||| ||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 35618 GATACCACGGTCGGCAACATCGGCCCGGAAGCTGGGGCGACGGTGACGCTCCAGGTCTAC 35677 ||||||||||||||||||||||| || |||| |||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 35678 AGCGG 35682 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 1656 bits (1836), Expect = 0.0 Identities = 937/947 (99%), Gaps = 2/947 (0%) Strand=Plus/Plus Query 7612 CCGCAGACCCGCGAGCAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 7671 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 62 Query 7672 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGACAGATCACCGAGCGCTATTCG 7731 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 63 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 122 Query 7732 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 7791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 182 Query 7792 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 7851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 242 Query 7852 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 7911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 302 Query 7912 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGTACCAAGGAAGAGGTG 7971 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 303 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 362 Query 7972 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 8031 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 422 Query 8032 -ACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 8090 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 482 Query 8091 CGACACCATCGCTTTCTGCTGGGCCTCTGGCCTGATCCAGTTCGGTGACCAGGTGCCCGA 8150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 CGACACCATCGCTTTCTGCTGGGCCTCTGGCCTGATCCAGTTCGGTGACCAGGTGCCCGA 542 Query 8151 GGGCGCCATCGAGATCGCCCGTGGGGACGACCAGGTCGTTCGCGAAATCCTCGTGACCAA 8210 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 543 GGGCGCCATCGAGATCGCCCGTGGGGACGACCAGGTCGTTCGCGAAAACCTCGTGACCAA 602 Query 8211 TTCGCGGCACGCTTACGACAACGTGTCGCTCCTGGTTCCGGGCGTACCCGAAGCGGCAAA 8270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 TTCGCGGCACGCTTACGACAACGTGTCGCTCCTGGTTCCGGGCGTACCCGAAGCGGCAAA 662 Query 8271 CCAAACCGAGGGCGGGGACGCACTGGAGTGCTTCATCCGTCTTCTCGCCAAGTACGACAG 8330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 CCAAACCGAGGGCGGGGACGCACTGGAGTGCTTCATCCGTCTTCTCGCCAAGTACGACAG 722 Query 8331 CGCCGCTTTCCAGGTCGCTTATGTGGAGGACGTGTGACATGGCACGCAACCGCGCGCAAC 8390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 CGCCGCTTTCCAGGTCGCTTATGTGGAGGACGTGTGACATGGCACGCAACCGCGCGCAAC 782 Query 8391 AGCTGTGCATCGTCACCTTGGACTATCAGCGCTTCCTGTTACCCCAGGCTGATGCACTCA 8450 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 AGCTGTGCATCG-CACCTTGGACTATCAGCGCTTCCTGTTACCCCAGGCTGATGCACTCA 841 Query 8451 AACTGATAGACATCATGAGTCGAGCCGCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTG 8510 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 AGCTGATAGACATCATGAGTCGAGCCGCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTG 901 Query 8511 GGTTCAAGTACACCGTCGGCGAAGCGCCGGAAGTCGAGTTGACGGTA 8557 | |||||||||||||||||||||| ||||||||||||||||||| || Sbjct 902 GATTCAAGTACACCGTCGGCGAAGTGCCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120226284086024