Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5124 161 2e-34 seq5123 143 6e-29 seq1295 105 2e-17 >seq5124 Length=26641161 Score = 161 bits (178), Expect = 2e-34 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | ||| ||||| || || || ||| Sbjct 11019382 GTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCA 11019323 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct 11019322 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 11019263 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| ||||| || || || ||||| || || || || Sbjct 11019262 ACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 11019203 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || |||||||| |||| Sbjct 11019202 TTAACGAAGATCTGCATCTTGT 11019181 >seq5123 Length=25762168 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || ||||||||||| ||||| | || || || || || || || Sbjct 6599683 GTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCG 6599742 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| ||||| ||||| || |||||||||||||| || || Sbjct 6599743 GCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTGAATCTTGGCCTTC 6599802 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||||| ||| || ||||| | || || ||||| ||||| || || Sbjct 6599803 ACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTC 6599862 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 6599863 TTCACGAAGATCTGCAT 6599879 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | |||||||| || || || || Sbjct 6601051 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCG 6601110 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| ||||| || |||||||||||||| || || Sbjct 6601111 GCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTGAATCTTGGCCTTC 6601170 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| | || || ||||| ||||| | || Sbjct 6601171 ACATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTCTTTCCAGTCAAGGTC 6601230 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 6601231 TTCACAAAGATCTGCATTTTG 6601251 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | |||||||| || || || || Sbjct 6599911 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCG 6599970 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| ||||| || |||||||||||||| || || Sbjct 6599971 GCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTGAATCTTGGCCTTC 6600030 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| | || || ||||| ||||| | || Sbjct 6600031 ACATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTCTTTCCAGTCAAGGTC 6600090 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 6600091 TTCACGAAGATCTGCAT 6600107 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || ||||||||||| ||||| | || || || || || || || Sbjct 6600595 GTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCG 6600654 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| || || ||||| || || || |||||||| || || Sbjct 6600655 GCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAATCTTAGCCTTC 6600714 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || || || || || ||||| ||||| || || Sbjct 6600715 ACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 6600774 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 6600775 TTCACGAAGATCTGCAT 6600791 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || ||||||||||| ||||| | || || || || || Sbjct 6598765 TGCAAAGTGGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGC 6598824 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| || | ||| ||||| || || ||||| || || || |||||||| Sbjct 6598825 TTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAATCTTA 6598884 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | || || || || ||||| | || || ||||| ||||| Sbjct 6598885 GCCTTCACATTCTCAATAGTGTCCGATGGCTCCACCTCCAAAGTGATGGTCTTGCCAGTC 6598944 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| Sbjct 6598945 AGGGTCTTCACGAAGATTTGCAT 6598967 >seq1295 Length=1233 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || ||||||||||| ||||| | || || || || || Sbjct 627 TGCAAAGTGGACTCCTTCTGGATGTTATAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGC 686 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| || | ||| ||||| || || ||||| || || || || ||||| Sbjct 687 TTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTA 746 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | || || || || || || || || || ||||| ||||| Sbjct 747 GCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTCTTGCCAGTC 806 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| Sbjct 807 AGGGTCTTCACGAAGATTTGCAT 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151322809255792