Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq5124 141 8e-29 >seq5124 Length=26641161 Score = 141 bits (156), Expect = 8e-29 Identities = 208/289 (72%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCC-GCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 || || ||||| |||||||| |||| |||| | || || || ||||| ||||| Sbjct 14434234 ACTCCGGTGGAACCGAATCCCGCCT-CGCCGCGCTCGGTGTCCTCCAGCTTGTCCACCAT 14434292 Query 5560 TTCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 ||| | | ||| | || ||||||||| || | ||| || || |||||||| || Sbjct 14434293 CACCAGTT-GCGGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCCGTGCT 14434351 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | ||||||||||| | | |||||||| || ||||| | |||||||| || | Sbjct 14434352 TCACCTCGAAATCTACATTAGAGTGATTGAACAGGACGACGCCGAGATTGCCGCGATAAT 14434411 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | |||| | ||| || |||||||| |||||||||| ||| || ||||| ||||| || | Sbjct 14434412 CCTCGTCCACCACACCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGCCCGGACCGAG 14434471 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 | ||||| || |||||| | || || |||||||| | |||||||| || Sbjct 14434472 GGGCCACCCGTCCGTAGGAGCCCTCCGGAAGCTGCACTTGCAGGTCGGT 14434520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430027543640288